* installing *source* package 'data.table' ... ** using staged installation gcc 13.2.0 *** pkg-config is not installed. *** Compilation will now be attempted and if it works you can ignore this message. In *** particular, this should be the case on Mac where zlib is built in or pkg-config *** is not installed. However, if compilation fails, try 'locate zlib.h zconf.h' and *** ensure the zlib development library is installed : *** deb: zlib1g-dev (Debian, Ubuntu, ...) *** rpm: zlib-devel (Fedora, EPEL, ...) *** There is a zlib in brew for OSX but the built in zlib should work. *** Note that zlib is required to compile R itself so you may find the advice in the R-admin *** guide helpful regarding zlib. On Debian/Ubuntu, zlib1g-dev is a dependency of r-base as *** shown by 'apt-cache showsrc r-base | grep ^Build-Depends | grep zlib', and therefore *** 'sudo apt-get build-dep r-base' should be sufficient too. *** To silence this message, please ensure that : *** 1) 'pkg-config --exists zlib' succeeds (i.e. $? -eq 0) *** 2) 'pkg-config --libs zlib' contains -lz *** Compilation will now be attempted ... * checking if R installation supports OpenMP without any extra hints... yes *** Compilation without compression support in fwrite ** libs using C compiler: 'gcc (Debian 13.2.0-5) 13.2.0' gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c assign.c -o assign.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c between.c -o between.o between.c: In function 'between': between.c:67: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 67 | #pragma omp parallel for num_threads(getDTthreads(longest, true)) | between.c:74: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 74 | #pragma omp parallel for num_threads(getDTthreads(longest, true)) | between.c:98: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 98 | #pragma omp parallel for num_threads(getDTthreads(longest, true)) | between.c:104: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 104 | #pragma omp parallel for num_threads(getDTthreads(longest, true)) | between.c:126: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 126 | #pragma omp parallel for num_threads(getDTthreads(longest, true)) | between.c:132: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 132 | #pragma omp parallel for num_threads(getDTthreads(longest, true)) | between.c:143: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 143 | #pragma omp parallel for num_threads(getDTthreads(longest, true)) | between.c:149: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 149 | #pragma omp parallel for num_threads(getDTthreads(longest, true)) | gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c bmerge.c -o bmerge.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c chmatch.c -o chmatch.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c cj.c -o cj.o cj.c: In function 'cj': cj.c:23: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 23 | #pragma omp parallel for num_threads(getDTthreads(thislen*eachrep, true)) | cj.c:31: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 31 | #pragma omp parallel for num_threads(getDTthreads(ncopy*blocklen, true)) | cj.c:39: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 39 | #pragma omp parallel for num_threads(getDTthreads(thislen*eachrep, true)) | cj.c:45: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 45 | #pragma omp parallel for num_threads(getDTthreads(ncopy*blocklen, true)) | cj.c:53: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 53 | #pragma omp parallel for num_threads(getDTthreads(thislen*eachrep, true)) | cj.c:59: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 59 | #pragma omp parallel for num_threads(getDTthreads(ncopy*blocklen, true)) | gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c coalesce.c -o coalesce.o coalesce.c: In function 'coalesce': coalesce.c:68: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 68 | #pragma omp parallel for num_threads(getDTthreads(nrow, true)) | coalesce.c:91: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 91 | #pragma omp parallel for num_threads(getDTthreads(nrow, true)) | coalesce.c:112: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 112 | #pragma omp parallel for num_threads(getDTthreads(nrow, true)) | coalesce.c:135: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 135 | #pragma omp parallel for num_threads(getDTthreads(nrow, true)) | gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c dogroups.c -o dogroups.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fastmean.c -o fastmean.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fcast.c -o fcast.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fifelse.c -o fifelse.o fifelse.c: In function 'fifelseR': fifelse.c:109: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 109 | #pragma omp parallel for num_threads(getDTthreads(len0, true)) | fifelse.c:124: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 124 | #pragma omp parallel for num_threads(getDTthreads(len0, true)) | fifelse.c:139: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 139 | #pragma omp parallel for num_threads(getDTthreads(len0, true)) | fifelse.c:169: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 169 | #pragma omp parallel for num_threads(getDTthreads(len0, true)) | gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fmelt.c -o fmelt.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c forder.c -o forder.o forder.c: In function 'range_str': forder.c:286: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 286 | #pragma omp parallel for num_threads(getDTthreads(n, true)) | forder.c:290: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas] 290 | #pragma omp atomic update | forder.c:295: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas] 295 | #pragma omp critical | forder.c: In function 'forder': forder.c:487: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 487 | #pragma omp parallel for num_threads(getDTthreads(nrow, true)) | forder.c:646: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 646 | #pragma omp parallel for num_threads(getDTthreads(nrow, true)) | forder.c:661: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 661 | #pragma omp parallel for num_threads(getDTthreads(nrow, true)) | forder.c:674: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 674 | #pragma omp parallel for num_threads(getDTthreads(nrow, true)) | forder.c:693: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 693 | #pragma omp parallel for num_threads(getDTthreads(nrow, true)) | forder.c:745: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 745 | #pragma omp parallel for num_threads(getDTthreads(nrow, true)) | forder.c: In function 'radix_r': forder.c:1053: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 1053 | #pragma omp parallel num_threads(getDTthreads(nBatch, false)) | forder.c:1058: warning: ignoring '#pragma omp for' [-Wunknown-pragmas] 1058 | #pragma omp for | forder.c:1158: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 1158 | #pragma omp parallel for num_threads(getDTthreads(nBatch, false)) | forder.c:1174: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 1174 | #pragma omp parallel for num_threads(getDTthreads(nBatch, false)) | forder.c:1230: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 1230 | #pragma omp parallel for ordered schedule(dynamic) num_threads(MIN(nth, ngrp)) // #5077 | forder.c:1234: warning: ignoring '#pragma omp ordered' [-Wunknown-pragmas] 1234 | #pragma omp ordered | forder.c:1239: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 1239 | #pragma omp parallel for schedule(dynamic) num_threads(MIN(nth, ngrp)) // #5077 | gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frank.c -o frank.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fread.c -o fread.o fread.c: In function 'freadMain': fread.c:2222: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 2222 | #pragma omp parallel num_threads(nth) | fread.c:2226: warning: ignoring '#pragma omp master' [-Wunknown-pragmas] 2226 | #pragma omp master | fread.c:2265: warning: ignoring '#pragma omp for' [-Wunknown-pragmas] 2265 | #pragma omp for ordered schedule(dynamic) reduction(+:thRead,thPush) reduction(max:max_col) | fread.c:2314: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas] 2314 | #pragma omp atomic | fread.c:2436: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas] 2436 | #pragma omp critical | fread.c:2487: warning: ignoring '#pragma omp ordered' [-Wunknown-pragmas] 2487 | #pragma omp ordered | gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c freadR.c -o freadR.o freadR.c: In function 'pushBuffer': freadR.c:570: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas] 570 | #pragma omp critical | freadR.c: In function 'progress': freadR.c:676: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas] 676 | #pragma omp critical | freadR.c:687: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas] 687 | #pragma omp critical | gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c froll.c -o froll.o froll.c: In function 'frollmeanExact': froll.c:143: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 143 | #pragma omp parallel for num_threads(getDTthreads(nx, true)) | froll.c:181: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 181 | #pragma omp parallel for num_threads(getDTthreads(nx, true)) | froll.c: In function 'frollsumExact': froll.c:341: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 341 | #pragma omp parallel for num_threads(getDTthreads(nx, true)) | froll.c:374: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 374 | #pragma omp parallel for num_threads(getDTthreads(nx, true)) | gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frollR.c -o frollR.o frollR.c: In function 'frollfunR': frollR.c:180: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 180 | #pragma omp parallel for if (ialgo==0) schedule(dynamic) collapse(2) num_threads(getDTthreads(nx*nk, false)) | gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frolladaptive.c -o frolladaptive.o frolladaptive.c: In function 'fadaptiverollmeanFast': frolladaptive.c:45: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 45 | #pragma omp parallel for num_threads(getDTthreads(nx, true)) | frolladaptive.c:85: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 85 | #pragma omp parallel for num_threads(getDTthreads(nx, true)) | frolladaptive.c: In function 'fadaptiverollmeanExact': frolladaptive.c:117: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 117 | #pragma omp parallel for num_threads(getDTthreads(nx, true)) | frolladaptive.c:159: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 159 | #pragma omp parallel for num_threads(getDTthreads(nx, true)) | frolladaptive.c: In function 'fadaptiverollsumFast': frolladaptive.c:234: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 234 | #pragma omp parallel for num_threads(getDTthreads(nx, true)) | frolladaptive.c:274: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 274 | #pragma omp parallel for num_threads(getDTthreads(nx, true)) | frolladaptive.c: In function 'fadaptiverollsumExact': frolladaptive.c:301: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 301 | #pragma omp parallel for num_threads(getDTthreads(nx, true)) | frolladaptive.c:338: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 338 | #pragma omp parallel for num_threads(getDTthreads(nx, true)) | gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fsort.c -o fsort.o fsort.c: In function 'fsort': fsort.c:130: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 130 | #pragma omp parallel for schedule(dynamic) num_threads(getDTthreads(nBatch, false)) | fsort.c:179: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 179 | #pragma omp parallel for num_threads(nth) | fsort.c:204: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 204 | #pragma omp parallel for num_threads(nth) | fsort.c:254: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 254 | #pragma omp parallel num_threads(getDTthreads(MSBsize, false)) | fsort.c:266: warning: ignoring '#pragma omp for' [-Wunknown-pragmas] 266 | #pragma omp for schedule(monotonic_dynamic,1) | gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fwrite.c -o fwrite.o fwrite.c: In function 'fwriteMain': fwrite.c:854: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 854 | #pragma omp parallel num_threads(nth) | fwrite.c:874: warning: ignoring '#pragma omp for' [-Wunknown-pragmas] 874 | #pragma omp for ordered schedule(dynamic) | fwrite.c:913: warning: ignoring '#pragma omp ordered' [-Wunknown-pragmas] 913 | #pragma omp ordered | gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fwriteR.c -o fwriteR.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c gsumm.c -o gsumm.o gsumm.c: In function 'gforce': gsumm.c:93: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 93 | #pragma omp parallel for num_threads(getDTthreads(ngrp, false)) | gsumm.c:117: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 117 | #pragma omp parallel for num_threads(getDTthreads(nBatch, false)) // schedule(dynamic,1) | gsumm.c:141: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 141 | #pragma omp parallel for num_threads(getDTthreads(highSize, false)) | gsumm.c:168: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 168 | #pragma omp parallel for num_threads(getDTthreads(nBatch, false)) // schedule(dynamic,1) | gsumm.c: In function 'gather': gsumm.c:220: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 220 | #pragma omp parallel for num_threads(getDTthreads(nBatch, false)) | gsumm.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 249 | #pragma omp parallel for num_threads(getDTthreads(nBatch, false)) | gsumm.c:276: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 276 | #pragma omp parallel for num_threads(getDTthreads(nBatch, false)) | gsumm.c:305: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 305 | #pragma omp parallel for num_threads(getDTthreads(nBatch, false)) | gsumm.c: In function 'gsum': gsumm.c:363: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 363 | #pragma omp parallel for num_threads(getDTthreads(highSize, false)) //schedule(dynamic,1) | gsumm.c:380: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 380 | #pragma omp parallel for num_threads(getDTthreads(highSize, false)) | gsumm.c:409: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 409 | #pragma omp parallel for num_threads(getDTthreads(highSize, false)) | gsumm.c:437: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 437 | #pragma omp parallel for num_threads(getDTthreads(highSize, false)) | gsumm.c:452: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 452 | #pragma omp parallel for num_threads(getDTthreads(highSize, false)) | gsumm.c:473: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 473 | #pragma omp parallel for num_threads(getDTthreads(highSize, false)) | gsumm.c:488: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 488 | #pragma omp parallel for num_threads(getDTthreads(highSize, false)) | gsumm.c:508: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 508 | #pragma omp parallel for num_threads(getDTthreads(highSize, false)) | gsumm.c:532: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 532 | #pragma omp parallel for num_threads(getDTthreads(highSize, false)) | gsumm.c:548: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 548 | #pragma omp parallel for num_threads(getDTthreads(highSize, false)) | gsumm.c: In function 'gmean': gsumm.c:601: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 601 | #pragma omp parallel for num_threads(getDTthreads(highSize, false)) | gsumm.c:614: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 614 | #pragma omp parallel for num_threads(getDTthreads(ngrp, true)) | gsumm.c:620: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 620 | #pragma omp parallel for num_threads(getDTthreads(highSize, false)) | gsumm.c:638: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 638 | #pragma omp parallel for num_threads(getDTthreads(ngrp, true)) | gsumm.c:649: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 649 | #pragma omp parallel for num_threads(getDTthreads(highSize, false)) | gsumm.c:663: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 663 | #pragma omp parallel for num_threads(getDTthreads(ngrp, true)) | gsumm.c:679: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 679 | #pragma omp parallel for num_threads(getDTthreads(highSize, false)) | gsumm.c:702: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 702 | #pragma omp parallel for num_threads(getDTthreads(ngrp, true)) | gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c idatetime.c -o idatetime.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c ijoin.c -o ijoin.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c inrange.c -o inrange.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c nafill.c -o nafill.o nafill.c: In function 'nafillR': nafill.c:193: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 193 | #pragma omp parallel for if (nx>1) num_threads(getDTthreads(nx, true)) | gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c negate.c -o negate.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c nqrecreateindices.c -o nqrecreateindices.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c openmp-utils.c -o openmp-utils.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c programming.c -o programming.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c quickselect.c -o quickselect.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c rbindlist.c -o rbindlist.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c reorder.c -o reorder.o reorder.c: In function 'reorder': reorder.c:67: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 67 | #pragma omp parallel for num_threads(getDTthreads(end, true)) | reorder.c:78: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 78 | #pragma omp parallel for num_threads(getDTthreads(end, true)) | reorder.c:85: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 85 | #pragma omp parallel for num_threads(getDTthreads(end, true)) | reorder.c:92: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 92 | #pragma omp parallel for num_threads(getDTthreads(end, true)) | gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c shift.c -o shift.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c snprintf.c -o snprintf.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c subset.c -o subset.o subset.c: In function 'subsetVectorRaw': subset.c:54: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 54 | PARLOOP(NA_INTEGER) | subset.c:54: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] subset.c:60: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 60 | PARLOOP(INT64_MIN) | subset.c:60: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] subset.c:64: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 64 | PARLOOP(NA_REAL) | subset.c:64: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] subset.c:93: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 93 | PARLOOP(NA_CPLX) | subset.c:93: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] subset.c:98: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 98 | PARLOOP(0) | subset.c:98: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] subset.c: In function 'convertNegAndZeroIdx': subset.c:145: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 145 | #pragma omp parallel for num_threads(getDTthreads(n, true)) | gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c transpose.c -o transpose.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c types.c -o types.o types.c: In function 'testMsgR': types.c:72: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 72 | #pragma omp parallel for schedule(dynamic) collapse(2) num_threads(getDTthreads(nx*nk, false)) | gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c uniqlist.c -o uniqlist.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c vecseq.c -o vecseq.o gcc -I"/usr/share/R/include" -DNDEBUG -fopenmp -DNOZLIB -fpic -g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c wrappers.c -o wrappers.o gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/usr/lib/R/lib -lR PKG_CFLAGS = -fopenmp -DNOZLIB PKG_LIBS = -fopenmp if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /builds/Rdatatable/data.table/data.table.Rcheck/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table)