Running with gitlab-runner 16.5.0 (853330f9)  on windows-shared-runners-manager Hs8mheX5, system ID: s_1a31f6141cb7 section_start:1714969089:resolve_secrets Resolving secrets section_end:1714969089:resolve_secrets section_start:1714969089:prepare_executor Preparing the "custom" executor Using Custom executor with driver autoscaler 0.1.3 (4f53eb0)... Creating virtual machine for the job... Virtual machine created! section_end:1714969341:prepare_executor section_start:1714969341:prepare_script Preparing environment Running on PACKER-653AB5EA via runner-wsrm-6783485228... section_end:1714969349:prepare_script section_start:1714969349:get_sources Getting source from Git repository Fetching changes... Initialized empty Git repository in C:/GitLab-Runner/builds/Rdatatable/data.table/.git/ Created fresh repository. Checking out ca815bab as detached HEAD (ref is master)... git-lfs/2.8.0 (GitHub; windows amd64; go 1.12.2; git 30af66bb) Skipping Git submodules setup section_end:1714969367:get_sources section_start:1714969367:download_artifacts Downloading artifacts Version: 16.5.0 Git revision: 853330f9 Git branch: 16-5-stable GO version: go1.20.10 Built: 2023-10-20T15:57:25+0000 OS/Arch: windows/amd64 Downloading artifacts for build (6783485032)... Runtime platform  arch=amd64 os=windows pid=1236 revision=853330f9 version=16.5.0 Downloading artifacts for mirror-packages (6783484983)... Downloading artifacts from coordinator... ok  host=storage.googleapis.com id=6783485032 responseStatus=200 OK token=glcbt-65 Runtime platform  arch=amd64 os=windows pid=3516 revision=853330f9 version=16.5.0 Downloading artifacts from coordinator... ok  host=storage.googleapis.com id=6783484983 responseStatus=200 OK token=glcbt-65 section_end:1714969375:download_artifacts section_start:1714969375:step_script Executing "step_script" stage of the job script WARNING: Starting with version 17.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/groups/gitlab-org/-/epics/6112 $ curl.exe -s -o ../R-win.exe $R_BIN --fail; if (!(Test-Path -Path ..\R-win.exe)) {Write-Error "R-win.exe not found, download failed?"} $ Start-Process -FilePath ..\R-win.exe -ArgumentList "/VERYSILENT /DIR=C:\R" -NoNewWindow -Wait $ curl.exe -s -o ../rtools.exe $RTOOLS_BIN --fail; if (!(Test-Path -Path ..\rtools.exe)) {Write-Error "rtools.exe not found, download failed?"} $ Start-Process -FilePath ..\rtools.exe -ArgumentList "/VERYSILENT /DIR=C:\rtools" -NoNewWindow -Wait $ $env:PATH = "C:\R\bin;C:\rtools\usr\bin;$env:PATH" $ Rscript.exe -e "source('.ci/ci.R'); install.packages(dcf.dependencies('DESCRIPTION', which='all'), repos=file.path('file://',getwd(),'bus/mirror-packages/cran'), quiet=TRUE)" There is a binary version available but the source version is later: binary source needs_compilation markdown 1.11 1.12 FALSE package 'R.oo' successfully unpacked and MD5 sums checked package 'R.methodsS3' successfully unpacked and MD5 sums checked package 'evaluate' successfully unpacked and MD5 sums checked also installing the dependencies 'R.oo', 'R.methodsS3', 'evaluate', 'highr', 'xfun', 'commonmark' package 'highr' successfully unpacked and MD5 sums checked package 'xfun' successfully unpacked and MD5 sums checked package 'commonmark' successfully unpacked and MD5 sums checked package 'bit64' successfully unpacked and MD5 sums checked package 'bit' successfully unpacked and MD5 sums checked package 'R.utils' successfully unpacked and MD5 sums checked package 'xts' successfully unpacked and MD5 sums checked package 'zoo' successfully unpacked and MD5 sums checked package 'yaml' successfully unpacked and MD5 sums checked package 'knitr' successfully unpacked and MD5 sums checked installing the source package 'markdown' $ cp.exe $(ls.exe -1t bus/build/data.table_*.tar.gz | head.exe -n 1) . $ R.exe CMD check --no-manual $(ls.exe -1t data.table_*.tar.gz | head.exe -n 1) * using log directory 'C:/GitLab-Runner/builds/Rdatatable/data.table/data.table.Rcheck' * using R version 4.2.3 (2023-03-15 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-manual' * checking for file 'data.table/DESCRIPTION' ... OK * this is package 'data.table' version '1.15.99' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'data.table' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Warning in read_symbols_from_dll(so, rarch) : this requires 'objdump.exe' to be on the PATH Warning in read_symbols_from_dll(so, rarch) : this requires 'objdump.exe' to be on the PATH See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'S4.R' Running 'autoprint.R' Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK Running 'froll.R' Running 'knitr.R' Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK Running 'main.R' Running 'nafill.R' Running 'other.R' Running 'programming.R' ERROR Running the tests in 'tests/main.R' failed. Last 13 lines of output: test.data.table() running: C:/GitLab-Runner/builds/Rdatatable/data.table/data.table.Rcheck/data.table/tests/tests.Rraw Error in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : 18448:119: unexpected INCOMPLETE_STRING 18447: DT = data.table(strrep(ja_ichi, 1L:4L)) 18448: test(2253.10, options=list(datatable.prettyprint.char = 4L), gsub(clean_regex, "", capture.output(print(DT))[-1L]), c(" ^ In addition: Warning message: In parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : invalid input found on input connection 'C:/GitLab-Runner/builds/Rdatatable/data.table/data.table.Rcheck/data.table/tests/tests.Rraw' Mon May 6 04:30:31 2024 endian==little, sizeof(long double)==16, longdouble.digits==64, sizeof(pointer)==8, TZ=='UTC', Sys.timezone()=='UTC', Sys.getlocale()=='LC_COLLATE=C;LC_CTYPE=English_United States.1252;LC_MONETARY=English_United States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252', l10n_info()=='MBCS=FALSE; UTF-8=FALSE; Latin-1=TRUE; codepage=1252; system.codepage=1252', getDTthreads()=='OpenMP version (_OPENMP)==201511; omp_get_num_procs()==2; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; R_DATATABLE_THROTTLE==unset (default 1024); omp_get_thread_limit()==2147483647; omp_get_max_threads()==2; OMP_THREAD_LIMIT==unset; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 1 threads with throttle==1024. See ?setDTthreads.', zlibVersion()==1.2.12 ZLIB_VERSION==1.2.12 Error in stopf("Failed in %s after test %s before the next test() call in %s", : Failed in 0.530s elapsed (0.520s cpu) after test -1 before the next test() call in C:/GitLab-Runner/builds/Rdatatable/data.table/data.table.Rcheck/data.table/tests/tests.Rraw Calls: test.data.table -> stopf -> raise_condition -> signal Execution halted * checking for unstated dependencies in vignettes ... Running 'types.R' OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... 'datatable-benchmarking.Rmd' using 'UTF-8'... OK 'datatable-faq.Rmd' using 'UTF-8'... OK 'datatable-importing.Rmd' using 'UTF-8'... OK 'datatable-intro.Rmd' using 'UTF-8'... OK 'datatable-keys-fast-subset.Rmd' using 'UTF-8'... OK 'datatable-programming.Rmd' using 'UTF-8'... OK 'datatable-reference-semantics.Rmd' using 'UTF-8'... OK 'datatable-reshape.Rmd' using 'UTF-8'... OK 'datatable-sd-usage.Rmd' using 'UTF-8'... OK 'datatable-secondary-indices-and-auto-indexing.Rmd' using 'UTF-8'... OK NONE * checking re-building of vignette outputs ... OK * DONE Status: 1 ERROR, 1 NOTE See 'C:/GitLab-Runner/builds/Rdatatable/data.table/data.table.Rcheck/00check.log' for details. section_end:1714969893:step_script section_start:1714969893:after_script Running after_script Running after script... $ $env:PATH = "C:\R\bin;C:\rtools\usr\bin;$env:PATH" $ mkdir.exe -p bus/$CI_JOB_NAME $ Rscript.exe -e "cat(Sys.getenv('CI_JOB_ID'), file=file.path('bus', Sys.getenv('CI_JOB_NAME'), 'id'))" $ Rscript.exe -e "cat(Sys.getenv('CI_JOB_STATUS'), file=file.path('bus', Sys.getenv('CI_JOB_NAME'), 'status'))" $ Rscript.exe -e "cat(Sys.getenv('CI_JOB_IMAGE'), file=file.path('bus', Sys.getenv('CI_JOB_NAME'), 'image'))" $ Rscript.exe -e "to<-file.path('bus', Sys.getenv('CI_JOB_NAME'), 'data.table.Rcheck'); if (dir.exists(from<-'data.table.Rcheck')) invisible(file.rename(from, to)); dir.exists(to)" [1] TRUE $ Rscript.exe -e "from<-tail(list.files(pattern='^data\\.table_.*\\.zip$'), 1L); to<-file.path('bus', Sys.getenv('CI_JOB_NAME'), from); if (length(from)) invisible(file.rename(from, to)); length(to)&&file.exists(to)" [1] FALSE section_end:1714969900:after_script section_start:1714969900:upload_artifacts_on_failure Uploading artifacts for failed job Version: 16.5.0 Git revision: 853330f9 Git branch: 16-5-stable GO version: go1.20.10 Built: 2023-10-20T15:57:25+0000 OS/Arch: windows/amd64 Uploading artifacts... Runtime platform  arch=amd64 os=windows pid=1820 revision=853330f9 version=16.5.0 bus/test-win-old: found 578 matching artifact files and directories Uploading artifacts as "archive" to coordinator... 201 Created id=6783485228 responseStatus=201 Created token=glcbt-65 section_end:1714969914:upload_artifacts_on_failure section_start:1714969914:cleanup_file_variables Cleaning up project directory and file based variables section_end:1714969916:cleanup_file_variables ERROR: Job failed: exit status 1