2025-12-26T04:21:31.767940Z 00O Running with gitlab-runner 18.7.0~pre.433.g3a5f2314 (3a5f2314)
2025-12-26T04:21:31.767952Z 00O   on blue-2.saas-linux-medium-amd64.runners-manager.gitlab.com/default ZQ74L_riD, system ID: s_805fb2e5035f
2025-12-26T04:21:31.767971Z 00O Resolving secrets
2025-12-26T04:21:31.768088Z 00O section_start:1766722891:prepare_executor
2025-12-26T04:21:31.768090Z 00O+Preparing the "docker+machine" executor
2025-12-26T04:21:31.896839Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-3.4.0 ...
2025-12-26T04:21:35.953481Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-3.4.0
2025-12-26T04:21:35.953945Z 00O Authenticating with credentials from job payload (GitLab Registry)
2025-12-26T04:21:35.953954Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-3.4.0 ...
2025-12-26T04:22:03.274631Z 00O Using docker image sha256:b20b23a3e03248250325d6a493b3b97c8d26a78ab4e59dff1ba538eb6b80bf89 for registry.gitlab.com/rdatatable/dockerfiles/r-3.4.0 with digest registry.gitlab.com/rdatatable/dockerfiles/r-3.4.0@sha256:0e6c9b21f6808c5dd6f8e466c1f55beb859121c5733bb17e15d1386608508b64 ...
2025-12-26T04:22:03.274705Z 00O section_end:1766722923:prepare_executor
2025-12-26T04:22:03.274706Z 00O+section_start:1766722923:prepare_script
2025-12-26T04:22:03.274792Z 00O+Preparing environment
2025-12-26T04:22:03.275532Z 00O Using effective pull policy of [always] for container sha256:59d393befa552c5de8348f97fb9e2a59a5ebfd28a244b7bef3fc2b1da72d7f7d
2025-12-26T04:22:12.672837Z 01O Running on runner-zq74lrid-project-3622566-concurrent-0 via runner-zq74lrid-s-l-m-amd64-1766722651-208aacb4...
2025-12-26T04:22:12.838868Z 00O section_end:1766722932:prepare_script
2025-12-26T04:22:12.838875Z 00O+section_start:1766722932:get_sources
2025-12-26T04:22:12.839366Z 00O+Getting source from Git repository
2025-12-26T04:22:13.179917Z 01O Gitaly correlation ID: ac7cb9db404448f5a93deba2094c6e33
2025-12-26T04:22:13.184456Z 01O Fetching changes...
2025-12-26T04:22:13.187440Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2025-12-26T04:22:13.189470Z 01O Created fresh repository.
2025-12-26T04:22:18.500838Z 01O Checking out a29c209b as detached HEAD (ref is master)...
2025-12-26T04:22:18.678990Z 01O 
2025-12-26T04:22:18.678994Z 01O Skipping Git submodules setup
2025-12-26T04:22:18.678995Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2025-12-26T04:22:18.908859Z 00O section_end:1766722938:get_sources
2025-12-26T04:22:18.908866Z 00O+section_start:1766722938:download_artifacts
2025-12-26T04:22:18.909512Z 00O+Downloading artifacts
2025-12-26T04:22:19.280022Z 01O Downloading artifacts for mirror-packages (12544376784)...
2025-12-26T04:22:21.891934Z 01E Downloading artifacts from coordinator... ok        correlation_id=b79c9fea52a64aa58f0ee471eca50550 host=storage.googleapis.com id=12544376784 responseStatus=200 OK token=6b_7xv9xt
2025-12-26T04:22:22.099272Z 01O Downloading artifacts for build (12544376788)...
2025-12-26T04:22:22.470501Z 01E Downloading artifacts from coordinator... ok        correlation_id=86353c0a13bf4aac9b2de712ff4b2c33 host=storage.googleapis.com id=12544376788 responseStatus=200 OK token=6b_7xv9xt
2025-12-26T04:22:23.162611Z 00O section_end:1766722943:download_artifacts
2025-12-26T04:22:23.162618Z 00O+section_start:1766722943:step_script
2025-12-26T04:22:23.163004Z 00O+Executing "step_script" stage of the job script
2025-12-26T04:22:23.163023Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-3.4.0
2025-12-26T04:22:23.163860Z 00O Using docker image sha256:b20b23a3e03248250325d6a493b3b97c8d26a78ab4e59dff1ba538eb6b80bf89 for registry.gitlab.com/rdatatable/dockerfiles/r-3.4.0 with digest registry.gitlab.com/rdatatable/dockerfiles/r-3.4.0@sha256:0e6c9b21f6808c5dd6f8e466c1f55beb859121c5733bb17e15d1386608508b64 ...
2025-12-26T04:22:23.500268Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2025-12-26T04:22:23.509248Z 01O $ mkdir -p ~/.R
2025-12-26T04:22:23.510583Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2025-12-26T04:22:23.631399Z 01E also installing the dependencies ‘commonmark’, ‘R.oo’, ‘R.methodsS3’, ‘xfun’, ‘litedown’
2025-12-26T04:22:23.631408Z 01E 
2025-12-26T04:22:48.652643Z 01E Updating HTML index of packages in '.Library'
2025-12-26T04:22:48.653429Z 01E Making 'packages.html' ... done
2025-12-26T04:22:48.663930Z 01E Warning message:
2025-12-26T04:22:48.663931Z 01E packages ‘xts’, ‘knitr’ are not available (for R version 3.4.0) 
2025-12-26T04:22:48.671173Z 01O $ R CMD check --no-manual --no-build-vignettes --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
2025-12-26T04:22:49.404832Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2025-12-26T04:22:49.404853Z 01O * using R version 3.4.0 (2017-04-21)
2025-12-26T04:22:49.405076Z 01O * using platform: x86_64-pc-linux-gnu (64-bit)
2025-12-26T04:22:49.405273Z 01O * using session charset: UTF-8
2025-12-26T04:22:49.405506Z 01O * using options ‘--no-manual --ignore-vignettes’
2025-12-26T04:22:49.405875Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2025-12-26T04:22:49.408221Z 01O * this is package ‘data.table’ version ‘1.18.99’
2025-12-26T04:22:49.408442Z 01O * package encoding: UTF-8
2025-12-26T04:22:49.408650Z 01O * checking package namespace information ... OK
2025-12-26T04:22:49.414276Z 01O * checking package dependencies ... NOTE
2025-12-26T04:22:54.737807Z 01O Packages suggested but not available for checking: ‘xts’ ‘knitr’
2025-12-26T04:22:54.737818Z 01O * checking if this is a source package ... OK
2025-12-26T04:22:54.740787Z 01O * checking if there is a namespace ... OK
2025-12-26T04:22:54.749141Z 01O * checking for executable files ... OK
2025-12-26T04:22:55.685569Z 01O * checking for hidden files and directories ... OK
2025-12-26T04:22:55.689194Z 01O * checking for portable file names ... OK
2025-12-26T04:22:55.696102Z 01O * checking for sufficient/correct file permissions ... OK
2025-12-26T04:22:55.698181Z 01O * checking whether package ‘data.table’ can be installed ... OK
2025-12-26T04:23:12.970449Z 01O * checking installed package size ... NOTE
2025-12-26T04:23:12.978911Z 01O   installed size is  8.5Mb
2025-12-26T04:23:12.979607Z 01O   sub-directories of 1Mb or more:
2025-12-26T04:23:12.980135Z 01O     doc     1.0Mb
2025-12-26T04:23:12.980136Z 01O     libs    2.3Mb
2025-12-26T04:23:12.980136Z 01O     po      1.7Mb
2025-12-26T04:23:12.980137Z 01O     tests   2.1Mb
2025-12-26T04:23:12.980459Z 01O * checking package directory ... OK
2025-12-26T04:23:12.980935Z 01O * checking DESCRIPTION meta-information ... OK
2025-12-26T04:23:13.155464Z 01O * checking top-level files ... OK
2025-12-26T04:23:13.155781Z 01O * checking for left-over files ... OK
2025-12-26T04:23:13.158213Z 01O * checking index information ... OK
2025-12-26T04:23:13.207328Z 01O * checking package subdirectories ... OK
2025-12-26T04:23:13.263401Z 01O * checking R files for non-ASCII characters ... OK
2025-12-26T04:23:13.314304Z 01O * checking R files for syntax errors ... OK
2025-12-26T04:23:13.415895Z 01O * checking whether the package can be loaded ... OK
2025-12-26T04:23:13.585383Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2025-12-26T04:23:13.713790Z 01O * checking whether the package can be unloaded cleanly ... OK
2025-12-26T04:23:13.845494Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2025-12-26T04:23:13.987387Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2025-12-26T04:23:14.167458Z 01O * checking loading without being on the library search path ... OK
2025-12-26T04:23:14.352284Z 01O * checking dependencies in R code ... OK
2025-12-26T04:23:15.124347Z 01O * checking S3 generic/method consistency ... OK
2025-12-26T04:23:15.765410Z 01O * checking replacement functions ... OK
2025-12-26T04:23:15.918404Z 01O * checking foreign function calls ... OK
2025-12-26T04:23:16.522465Z 01O * checking R code for possible problems ... OK
2025-12-26T04:23:24.639963Z 01O * checking Rd files ... OK
2025-12-26T04:23:24.955284Z 01O * checking Rd metadata ... OK
2025-12-26T04:23:24.999594Z 01O * checking Rd cross-references ... OK
2025-12-26T04:23:25.177642Z 01O * checking for missing documentation entries ... OK
2025-12-26T04:23:25.373640Z 01O * checking for code/documentation mismatches ... OK
2025-12-26T04:23:26.318481Z 01O * checking Rd \usage sections ... OK
2025-12-26T04:23:27.532798Z 01O * checking Rd contents ... OK
2025-12-26T04:23:27.836695Z 01O * checking for unstated dependencies in examples ... OK
2025-12-26T04:23:28.266309Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2025-12-26T04:23:28.278259Z 01O * checking line endings in Makefiles ... OK
2025-12-26T04:23:28.279007Z 01O * checking compilation flags in Makevars ... OK
2025-12-26T04:23:28.331115Z 01O * checking for GNU extensions in Makefiles ... OK
2025-12-26T04:23:28.332271Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2025-12-26T04:23:28.333251Z 01O * checking compiled code ... OK
2025-12-26T04:23:28.388747Z 01O * checking installed files from ‘inst/doc’ ... OK
2025-12-26T04:23:28.436249Z 01O * checking files in ‘vignettes’ ... SKIPPED
2025-12-26T04:23:28.436576Z 01O * checking examples ... OK
2025-12-26T04:23:31.842687Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2025-12-26T04:23:31.896800Z 01O * checking tests ...
2025-12-26T04:23:32.017742Z 01E   Running ‘autoprint.R’
2025-12-26T04:23:32.246318Z 01O 18,21d17
2025-12-26T04:23:32.246320Z 01O <        a
2025-12-26T04:23:32.246321Z 01O <    <int>
2025-12-26T04:23:32.246321Z 01O < 1:     1
2025-12-26T04:23:32.246322Z 01O < 2:     3
2025-12-26T04:23:32.246322Z 01O 28,31d23
2025-12-26T04:23:32.246323Z 01O <        a
2025-12-26T04:23:32.246323Z 01O <    <int>
2025-12-26T04:23:32.246326Z 01O < 1:     1
2025-12-26T04:23:32.246326Z 01O < 2:     3
2025-12-26T04:23:32.246327Z 01O 33,37d24
2025-12-26T04:23:32.246327Z 01O < Index: <a>
2025-12-26T04:23:32.246328Z 01O <        a
2025-12-26T04:23:32.246328Z 01O <    <int>
2025-12-26T04:23:32.246329Z 01O < 1:     1
2025-12-26T04:23:32.246329Z 01O < 2:     3
2025-12-26T04:23:32.246329Z 01O 39,43d25
2025-12-26T04:23:32.246330Z 01O < Index: <a>
2025-12-26T04:23:32.246330Z 01O <        a
2025-12-26T04:23:32.246331Z 01O <    <int>
2025-12-26T04:23:32.246331Z 01O < 1:     1
2025-12-26T04:23:32.246331Z 01O < 2:     3
2025-12-26T04:23:32.246332Z 01O 61,64d42
2025-12-26T04:23:32.246332Z 01O <        a
2025-12-26T04:23:32.246333Z 01O <    <int>
2025-12-26T04:23:32.246333Z 01O < 1:     1
2025-12-26T04:23:32.246333Z 01O < 2:     5
2025-12-26T04:23:32.246334Z 01O 66,69d43
2025-12-26T04:23:32.246334Z 01O <        a
2025-12-26T04:23:32.246335Z 01O <    <int>
2025-12-26T04:23:32.246335Z 01O < 1:     1
2025-12-26T04:23:32.246335Z 01O < 2:     6
2025-12-26T04:23:32.246336Z 01O 73,76d46
2025-12-26T04:23:32.246336Z 01O <        a
2025-12-26T04:23:32.246337Z 01O <    <int>
2025-12-26T04:23:32.246337Z 01O < 1:     1
2025-12-26T04:23:32.246337Z 01O < 2:     5
2025-12-26T04:23:32.246338Z 01O 143,145d112
2025-12-26T04:23:32.246338Z 01O <        a
2025-12-26T04:23:32.246339Z 01O <    <int>
2025-12-26T04:23:32.246339Z 01O < 1:     9
2025-12-26T04:23:32.246339Z 01O 151,154d117
2025-12-26T04:23:32.246340Z 01O <        a
2025-12-26T04:23:32.246340Z 01O <    <int>
2025-12-26T04:23:32.246341Z 01O < 1:    10
2025-12-26T04:23:32.246341Z 01O < 2:    10
2025-12-26T04:23:32.246341Z 01O 156,159d118
2025-12-26T04:23:32.246342Z 01O <        a
2025-12-26T04:23:32.246342Z 01O <    <int>
2025-12-26T04:23:32.246343Z 01O < 1:    10
2025-12-26T04:23:32.246343Z 01O < 2:    10
2025-12-26T04:23:32.246343Z 01O 161,164d119
2025-12-26T04:23:32.246344Z 01O <        a
2025-12-26T04:23:32.246344Z 01O <    <int>
2025-12-26T04:23:32.246345Z 01O < 1:    10
2025-12-26T04:23:32.246345Z 01O < 2:    10
2025-12-26T04:23:32.246345Z 01O 210,212d164
2025-12-26T04:23:32.246346Z 01O <        x     y
2025-12-26T04:23:32.246346Z 01O <    <num> <num>
2025-12-26T04:23:32.246347Z 01O < 1:     1     1
2025-12-26T04:23:32.240705Z 01E   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ...  Running ‘froll.R’
2025-12-26T04:30:23.579487Z 01E   Running ‘knitr.R’
2025-12-26T04:30:23.729236Z 01E   Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
2025-12-26T04:30:23.738387Z 01E   Running ‘main.R’
2025-12-26T04:31:06.093752Z 01E   Running ‘mergelist.R’
2025-12-26T04:31:07.463567Z 01E   Running ‘nafill.R’
2025-12-26T04:31:07.928140Z 01E   Running ‘other.R’
2025-12-26T04:31:08.154383Z 01E   Running ‘programming.R’
2025-12-26T04:31:08.764398Z 01E   Running ‘S4.R’
2025-12-26T04:31:09.119463Z 01E   Running ‘types.R’
2025-12-26T04:31:09.392502Z 01O  OK
2025-12-26T04:31:09.393703Z 01O * DONE
2025-12-26T04:31:09.394548Z 01E 
2025-12-26T04:31:09.394749Z 01O Status: 2 NOTEs
2025-12-26T04:31:09.394990Z 01E See
2025-12-26T04:31:09.394991Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2025-12-26T04:31:09.394992Z 01E for details.
2025-12-26T04:31:09.394992Z 01E 
2025-12-26T04:31:09.395234Z 01E 
2025-12-26T04:31:09.582295Z 00O section_end:1766723469:step_script
2025-12-26T04:31:09.582302Z 00O+section_start:1766723469:after_script
2025-12-26T04:31:09.582660Z 00O+Running after_script
2025-12-26T04:31:09.935991Z 01O Running after script...
2025-12-26T04:31:09.936021Z 01O $ mkdir -p bus/$CI_JOB_NAME
2025-12-26T04:31:09.937091Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2025-12-26T04:31:09.937177Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2025-12-26T04:31:09.937361Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2025-12-26T04:31:09.937365Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2025-12-26T04:31:10.104699Z 00O section_end:1766723470:after_script
2025-12-26T04:31:10.104706Z 00O+section_start:1766723470:upload_artifacts_on_success
2025-12-26T04:31:10.105380Z 00O+Uploading artifacts for successful job
2025-12-26T04:31:10.505445Z 01O Uploading artifacts...
2025-12-26T04:31:10.576085Z 01E bus/test-lin-ancient-cran: found 672 matching artifact files and directories 
2025-12-26T04:31:12.933659Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=c3f67fb1badd40d9a5a06df9a1564e8e id=12544376802 responseStatus=201 Created token=6b_7xv9xt
2025-12-26T04:31:13.116663Z 00O section_end:1766723473:upload_artifacts_on_success
2025-12-26T04:31:13.116671Z 00O+section_start:1766723473:cleanup_file_variables
2025-12-26T04:31:13.116762Z 00O+Cleaning up project directory and file based variables
2025-12-26T04:31:13.640874Z 00O section_end:1766723473:cleanup_file_variables
2025-12-26T04:31:13.640880Z 00O+
2025-12-26T04:31:13.670321Z 00O Job succeeded