2026-10-12T04:21:04.758771Z 00O Running with gitlab-runner 19.5.0~pre.2272.g28a18501 (28a18501) 2026-10-12T04:21:04.758787Z 00O  on k8s.saas-linux-medium-amd64.runners-manager.gitlab.com/default j8vTLRhES, system ID: r_YELUDHuIwkvL 2026-10-12T04:21:04.758789Z 00O  UUID: 01a01aa6-2f91-7d2c-b24d-7e2d2752ac58 2026-10-12T04:21:04.758796Z 00O  feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true, FF_USE_JOB_ROUTER:true, FF_MACHINE_OPTIONS_EXPAND_ENV:true, FF_DOCKER_MACHINE_JSON_OUTPUT:true 2026-10-12T04:21:04.758819Z 00O Resolving secrets 2026-10-12T04:21:04.758970Z 00O section_start:1791778864:prepare_executor  2026-10-12T04:21:04.758973Z 00O+Preparing the "docker+machine" executor 2026-10-12T04:21:04.829489Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 ... 2026-10-12T04:21:04.829534Z 00O Using helper image: registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501 (overridden, default would be registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.5.0 ) 2026-10-12T04:21:04.829542Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501 2026-10-12T04:21:04.830170Z 00O Authenticating with credentials from job payload (GitLab Registry) 2026-10-12T04:21:04.830176Z 00O Pulling docker image registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501 ... 2026-10-12T04:21:06.421699Z 00O Using docker image sha256:08749606eabcea842cbd189a80b2f3d7670b949f70dfc654d45d8b81554bd837 for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:eea1152121f06d47f94871fef69559be0a87c75212f227e34e7617d1a3bbe6c3 ... 2026-10-12T04:21:08.247011Z 00O Using helper image: registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501 (overridden, default would be registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.5.0 ) 2026-10-12T04:21:08.247023Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501 2026-10-12T04:21:08.247934Z 00O Using docker image sha256:08749606eabcea842cbd189a80b2f3d7670b949f70dfc654d45d8b81554bd837 for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:eea1152121f06d47f94871fef69559be0a87c75212f227e34e7617d1a3bbe6c3 ... 2026-10-12T04:21:08.247943Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 2026-10-12T04:21:08.248711Z 00O Authenticating with credentials from job payload (GitLab Registry) 2026-10-12T04:21:08.248716Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 ... 2026-10-12T04:21:39.469218Z 00O Using docker image sha256:82ffa34a9a925bfecd1bf24bb3e78896fd356e1e68f45dd1566949d137bc89b4 for registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 with digest registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0@sha256:205afe10a22db0df2bf3357b0b05860f4e49b76beabd9b4eefdda77c8eefc48e ... 2026-10-12T04:21:39.469290Z 00O section_end:1791778899:prepare_executor  2026-10-12T04:21:39.469404Z 00O+section_start:1791778899:prepare_script  2026-10-12T04:21:39.469408Z 00O+Preparing environment 2026-10-12T04:21:39.469439Z 00O Using helper image: registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501 (overridden, default would be registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.5.0 ) 2026-10-12T04:21:39.469446Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501 2026-10-12T04:21:39.470439Z 00O Using docker image sha256:08749606eabcea842cbd189a80b2f3d7670b949f70dfc654d45d8b81554bd837 for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:eea1152121f06d47f94871fef69559be0a87c75212f227e34e7617d1a3bbe6c3 ... 2026-10-12T04:21:39.470448Z 00O Using effective pull policy of [always] for container sha256:08749606eabcea842cbd189a80b2f3d7670b949f70dfc654d45d8b81554bd837 2026-10-12T04:21:48.925634Z 01O Running on runner-j8vtlrhes-project-3622566-concurrent-0 via runner-j8vtlrhes-s-l-m-amd64-1791777896-97e88bff... 2026-10-12T04:21:48.928603Z 01O Running on CPU: INTEL(R) XEON(R) PLATINUM 8581C CPU @ 2.10GHz (avx, avx2, avx512f) 2026-10-12T04:21:49.075596Z 00O section_end:1791778909:prepare_script  2026-10-12T04:21:49.076050Z 00O+section_start:1791778909:get_sources  2026-10-12T04:21:49.076055Z 00O+Getting source from Git repository 2026-10-12T04:21:49.383664Z 01O Gitaly correlation ID: 05d80cc7eb3b4effadb5aeb600b85e24 2026-10-12T04:21:49.388661Z 01O Fetching changes... 2026-10-12T04:21:49.391810Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/ 2026-10-12T04:21:49.393602Z 01O Created fresh repository. 2026-10-12T04:21:54.421071Z 01O Checking out df59dd63 as detached HEAD (ref is master)... 2026-10-12T04:21:54.582120Z 01O 2026-10-12T04:21:54.582125Z 01O Skipping Git submodules setup 2026-10-12T04:21:54.582126Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping' 2026-10-12T04:21:54.777579Z 00O section_end:1791778914:get_sources  2026-10-12T04:21:54.778049Z 00O+section_start:1791778914:download_artifacts  2026-10-12T04:21:54.778053Z 00O+Downloading artifacts 2026-10-12T04:21:55.110733Z 01O Downloading artifacts for build (17100991411)... 2026-10-12T04:21:55.299156Z 01E Direct download from storage.googleapis.com  correlation_id=02e7fd287e7c46e29c7b905bed316902 id=17100991411 status=302 token=74_xRSXWz 2026-10-12T04:21:55.478809Z 01E Downloading artifacts from coordinator... ok  correlation_id=02e7fd287e7c46e29c7b905bed316902 id=17100991411 status=302 token=74_xRSXWz 2026-10-12T04:21:55.487095Z 01O Downloading artifacts for mirror-packages (17100991410)... 2026-10-12T04:21:55.674550Z 01E Direct download from storage.googleapis.com  correlation_id=80191fa7964a49c4bf1a68fe8ddbd0a2 id=17100991410 status=302 token=74_xRSXWz 2026-10-12T04:21:56.058204Z 01E Downloading artifacts from coordinator... ok  correlation_id=80191fa7964a49c4bf1a68fe8ddbd0a2 id=17100991410 status=302 token=74_xRSXWz 2026-10-12T04:21:57.137632Z 00O section_end:1791778917:download_artifacts  2026-10-12T04:21:57.137886Z 00O+section_start:1791778917:step_script  2026-10-12T04:21:57.137893Z 00O+Executing "step_script" stage of the job script 2026-10-12T04:21:57.137902Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 2026-10-12T04:21:57.138815Z 00O Using docker image sha256:82ffa34a9a925bfecd1bf24bb3e78896fd356e1e68f45dd1566949d137bc89b4 for registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 with digest registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0@sha256:205afe10a22db0df2bf3357b0b05860f4e49b76beabd9b4eefdda77c8eefc48e ... 2026-10-12T04:21:57.433925Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) . 2026-10-12T04:21:57.441226Z 01O $ mkdir -p ~/.R 2026-10-12T04:21:57.442226Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)' 2026-10-12T04:21:57.616638Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’ 2026-10-12T04:21:57.616644Z 01E 2026-10-12T04:22:33.589827Z 01E Updating HTML index of packages in '.Library' 2026-10-12T04:22:33.590185Z 01E Making 'packages.html' ... done 2026-10-12T04:22:33.598796Z 01E Warning message: 2026-10-12T04:22:33.598797Z 01E packages ‘xts’, ‘knitr’ are not available (for R version 3.5.0) 2026-10-12T04:22:33.603238Z 01O $ R CMD check --no-manual --no-build-vignettes --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1) 2026-10-12T04:22:33.751747Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’ 2026-10-12T04:22:33.751752Z 01O * using R version 3.5.0 (2018-04-23) 2026-10-12T04:22:33.751857Z 01O * using platform: x86_64-pc-linux-gnu (64-bit) 2026-10-12T04:22:33.752044Z 01O * using session charset: UTF-8 2026-10-12T04:22:34.252904Z 01O * using options ‘--no-manual --ignore-vignettes’ 2026-10-12T04:22:34.253102Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK 2026-10-12T04:22:34.255450Z 01O * this is package ‘data.table’ version ‘1.18.99’ 2026-10-12T04:22:34.255531Z 01O * package encoding: UTF-8 2026-10-12T04:22:34.255728Z 01O * checking package namespace information ... OK 2026-10-12T04:22:34.260640Z 01O * checking package dependencies ... NOTE 2026-10-12T04:22:37.118529Z 01O Package suggested but not available for checking: ‘xts’ 2026-10-12T04:22:37.118531Z 01O 2026-10-12T04:22:37.118531Z 01O Package which this enhances but not available for checking: ‘knitr’ 2026-10-12T04:22:37.118531Z 01O * checking if this is a source package ... OK 2026-10-12T04:22:37.121273Z 01O * checking if there is a namespace ... OK 2026-10-12T04:22:37.125620Z 01O * checking for executable files ... OK 2026-10-12T04:22:37.894287Z 01O * checking for hidden files and directories ... OK 2026-10-12T04:22:37.896125Z 01O * checking for portable file names ... OK 2026-10-12T04:22:37.901614Z 01O * checking for sufficient/correct file permissions ... OK 2026-10-12T04:22:37.902991Z 01O * checking whether package ‘data.table’ can be installed ... OK 2026-10-12T04:22:57.434554Z 01O * checking installed package size ... NOTE 2026-10-12T04:22:57.437607Z 01O installed size is 9.0Mb 2026-10-12T04:22:57.438206Z 01O sub-directories of 1Mb or more: 2026-10-12T04:22:57.438652Z 01O doc 1.1Mb 2026-10-12T04:22:57.438654Z 01O libs 2.6Mb 2026-10-12T04:22:57.438655Z 01O po 1.7Mb 2026-10-12T04:22:57.438655Z 01O tests 2.2Mb 2026-10-12T04:22:57.438808Z 01O * checking package directory ... OK 2026-10-12T04:22:57.439052Z 01O * checking DESCRIPTION meta-information ... OK 2026-10-12T04:22:57.604657Z 01O * checking top-level files ... OK 2026-10-12T04:22:57.604821Z 01O * checking for left-over files ... OK 2026-10-12T04:22:57.606860Z 01O * checking index information ... OK 2026-10-12T04:22:57.740319Z 01O * checking package subdirectories ... OK 2026-10-12T04:22:57.913483Z 01O * checking R files for non-ASCII characters ... OK 2026-10-12T04:22:57.957161Z 01O * checking R files for syntax errors ... OK 2026-10-12T04:22:58.039153Z 01O * checking whether the package can be loaded ... OK 2026-10-12T04:22:58.204399Z 01O * checking whether the package can be loaded with stated dependencies ... OK 2026-10-12T04:22:58.333827Z 01O * checking whether the package can be unloaded cleanly ... OK 2026-10-12T04:22:58.467860Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK 2026-10-12T04:22:58.599217Z 01O * checking whether the namespace can be unloaded cleanly ... OK 2026-10-12T04:22:58.764802Z 01O * checking loading without being on the library search path ... OK 2026-10-12T04:22:58.930196Z 01O * checking dependencies in R code ... OK 2026-10-12T04:22:59.516031Z 01O * checking S3 generic/method consistency ... OK 2026-10-12T04:23:00.229403Z 01O * checking replacement functions ... OK 2026-10-12T04:23:00.400414Z 01O * checking foreign function calls ... OK 2026-10-12T04:23:01.000730Z 01O * checking R code for possible problems ... OK 2026-10-12T04:23:08.948533Z 01O * checking Rd files ... OK 2026-10-12T04:23:09.240989Z 01O * checking Rd metadata ... OK 2026-10-12T04:23:09.279270Z 01O * checking Rd cross-references ... OK 2026-10-12T04:23:09.471471Z 01O * checking for missing documentation entries ... OK 2026-10-12T04:23:09.656519Z 01O * checking for code/documentation mismatches ... OK 2026-10-12T04:23:10.544706Z 01O * checking Rd \usage sections ... OK 2026-10-12T04:23:11.657316Z 01O * checking Rd contents ... OK 2026-10-12T04:23:11.934829Z 01O * checking for unstated dependencies in examples ... OK 2026-10-12T04:23:12.349536Z 01O * checking line endings in shell scripts ... OK 2026-10-12T04:23:12.349972Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK 2026-10-12T04:23:12.357040Z 01O * checking line endings in Makefiles ... OK 2026-10-12T04:23:12.357043Z 01O * checking compilation flags in Makevars ... OK 2026-10-12T04:23:12.404936Z 01O * checking for GNU extensions in Makefiles ... OK 2026-10-12T04:23:12.405672Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK 2026-10-12T04:23:12.407569Z 01O * checking compiled code ... NOTE 2026-10-12T04:23:12.457702Z 01O File ‘data.table/libs/data.table.so’: 2026-10-12T04:23:12.457703Z 01O Found non-API calls to R: ‘R_GetConnection’, ‘R_ReadConnection’ 2026-10-12T04:23:12.458032Z 01O 2026-10-12T04:23:12.458032Z 01O Compiled code should not call non-API entry points in R. 2026-10-12T04:23:12.458033Z 01O 2026-10-12T04:23:12.458033Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. 2026-10-12T04:23:12.458476Z 01O * checking installed files from ‘inst/doc’ ... OK 2026-10-12T04:23:12.526379Z 01O * checking files in ‘vignettes’ ... SKIPPED 2026-10-12T04:23:12.526523Z 01O * checking examples ... OK 2026-10-12T04:23:15.722909Z 01O * checking for unstated dependencies in ‘tests’ ... OK 2026-10-12T04:23:15.775160Z 01O * checking tests ... 2026-10-12T04:23:15.896838Z 01E Running ‘autoprint.R’ 2026-10-12T04:23:16.111727Z 01O 18,21d17 2026-10-12T04:23:16.111728Z 01O < a 2026-10-12T04:23:16.111728Z 01O < 2026-10-12T04:23:16.111729Z 01O < 1: 1 2026-10-12T04:23:16.111729Z 01O < 2: 3 2026-10-12T04:23:16.111730Z 01O 28,31d23 2026-10-12T04:23:16.111730Z 01O < a 2026-10-12T04:23:16.111731Z 01O < 2026-10-12T04:23:16.111731Z 01O < 1: 1 2026-10-12T04:23:16.111731Z 01O < 2: 3 2026-10-12T04:23:16.111732Z 01O 33,37d24 2026-10-12T04:23:16.111732Z 01O < Index: 2026-10-12T04:23:16.111733Z 01O < a 2026-10-12T04:23:16.111733Z 01O < 2026-10-12T04:23:16.111733Z 01O < 1: 1 2026-10-12T04:23:16.111734Z 01O < 2: 3 2026-10-12T04:23:16.111734Z 01O 39,43d25 2026-10-12T04:23:16.111734Z 01O < Index: 2026-10-12T04:23:16.111734Z 01O < a 2026-10-12T04:23:16.111735Z 01O < 2026-10-12T04:23:16.111735Z 01O < 1: 1 2026-10-12T04:23:16.111735Z 01O < 2: 3 2026-10-12T04:23:16.111736Z 01O 61,64d42 2026-10-12T04:23:16.111736Z 01O < a 2026-10-12T04:23:16.111736Z 01O < 2026-10-12T04:23:16.111736Z 01O < 1: 1 2026-10-12T04:23:16.111737Z 01O < 2: 5 2026-10-12T04:23:16.111737Z 01O 66,69d43 2026-10-12T04:23:16.111737Z 01O < a 2026-10-12T04:23:16.111737Z 01O < 2026-10-12T04:23:16.111738Z 01O < 1: 1 2026-10-12T04:23:16.111738Z 01O < 2: 6 2026-10-12T04:23:16.111738Z 01O 73,76d46 2026-10-12T04:23:16.111738Z 01O < a 2026-10-12T04:23:16.111739Z 01O < 2026-10-12T04:23:16.111739Z 01O < 1: 1 2026-10-12T04:23:16.111739Z 01O < 2: 5 2026-10-12T04:23:16.111740Z 01O 143,145d112 2026-10-12T04:23:16.111740Z 01O < a 2026-10-12T04:23:16.111740Z 01O < 2026-10-12T04:23:16.111740Z 01O < 1: 9 2026-10-12T04:23:16.111741Z 01O 151,154d117 2026-10-12T04:23:16.111741Z 01O < a 2026-10-12T04:23:16.111741Z 01O < 2026-10-12T04:23:16.111741Z 01O < 1: 10 2026-10-12T04:23:16.111742Z 01O < 2: 10 2026-10-12T04:23:16.111742Z 01O 156,159d118 2026-10-12T04:23:16.111765Z 01O < a 2026-10-12T04:23:16.111766Z 01O < 2026-10-12T04:23:16.111766Z 01O < 1: 10 2026-10-12T04:23:16.111766Z 01O < 2: 10 2026-10-12T04:23:16.111766Z 01O 161,164d119 2026-10-12T04:23:16.111767Z 01O < a 2026-10-12T04:23:16.111767Z 01O < 2026-10-12T04:23:16.111767Z 01O < 1: 10 2026-10-12T04:23:16.111767Z 01O < 2: 10 2026-10-12T04:23:16.111768Z 01O 210,212d164 2026-10-12T04:23:16.111768Z 01O < x y 2026-10-12T04:23:16.111768Z 01O < 2026-10-12T04:23:16.111769Z 01O < 1: 1 1 2026-10-12T04:23:16.107223Z 01E Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... Running ‘froll.R’ 2026-10-12T04:32:18.859398Z 01E Running ‘litedown.R’ 2026-10-12T04:32:19.117935Z 01E Running ‘main.R’ 2026-10-12T04:32:56.526590Z 01E Running ‘mergelist.R’ 2026-10-12T04:32:57.760133Z 01E Running ‘nafill.R’ 2026-10-12T04:32:58.195203Z 01E Running ‘optimize.R’ 2026-10-12T04:32:59.330924Z 01E Running ‘other.R’ 2026-10-12T04:32:59.501557Z 01E Running ‘programming.R’ 2026-10-12T04:33:00.009714Z 01E Running ‘S4.R’ 2026-10-12T04:33:00.268959Z 01E Running ‘self.R’ 2026-10-12T04:33:00.464225Z 01E Running ‘types.R’ 2026-10-12T04:33:00.667668Z 01O OK 2026-10-12T04:33:00.668207Z 01O * DONE 2026-10-12T04:33:00.668830Z 01E 2026-10-12T04:33:00.668904Z 01O Status: 3 NOTEs 2026-10-12T04:33:00.669039Z 01E See 2026-10-12T04:33:00.669040Z 01E ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’ 2026-10-12T04:33:00.669041Z 01E for details. 2026-10-12T04:33:00.669042Z 01E 2026-10-12T04:33:00.669192Z 01E 2026-10-12T04:33:00.834318Z 00O section_end:1791779580:step_script  2026-10-12T04:33:00.834568Z 00O+section_start:1791779580:after_script  2026-10-12T04:33:00.834572Z 00O+Running after_script 2026-10-12T04:33:01.122358Z 01O Running after script... 2026-10-12T04:33:01.122380Z 01O $ mkdir -p bus/$CI_JOB_NAME 2026-10-12T04:33:01.123377Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id 2026-10-12T04:33:01.123379Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status 2026-10-12T04:33:01.123477Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image 2026-10-12T04:33:01.123477Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/ 2026-10-12T04:33:01.264163Z 00O section_end:1791779581:after_script  2026-10-12T04:33:01.264602Z 00O+section_start:1791779581:upload_artifacts_on_success  2026-10-12T04:33:01.264606Z 00O+Uploading artifacts for successful job 2026-10-12T04:33:01.601972Z 01O Uploading artifacts... 2026-10-12T04:33:01.651710Z 01E bus/test-lin-ancient-cran: found 701 matching artifact files and directories 2026-10-12T04:33:03.042641Z 01E Uploading artifacts as "archive" to coordinator... 201 Created correlation_id=776440bff6f244a4ae704ec4271cd901 id=17100991417 status=201 token=74_xRSXWz 2026-10-12T04:33:03.197993Z 00O section_end:1791779583:upload_artifacts_on_success  2026-10-12T04:33:03.198264Z 00O+section_start:1791779583:cleanup_file_variables  2026-10-12T04:33:03.198269Z 00O+Cleaning up project directory and file based variables 2026-10-12T04:33:03.646868Z 00O section_end:1791779583:cleanup_file_variables  2026-10-12T04:33:03.665396Z 00O Job succeeded