2026-08-28T04:21:51.949969Z 00O Running with gitlab-runner 19.3.0 (9cbf0074) 2026-08-28T04:21:51.949987Z 00O  on k8s.saas-linux-medium-amd64.runners-manager.gitlab.com/default j8vTLRhES, system ID: r_Shvof3IePSlk 2026-08-28T04:21:51.949994Z 00O  feature flags: FF_USE_FASTZIP:true, FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true 2026-08-28T04:21:51.950020Z 00O Resolving secrets 2026-08-28T04:21:51.950196Z 00O section_start:1787890911:prepare_executor  2026-08-28T04:21:51.950200Z 00O+Preparing the "docker+machine" executor 2026-08-28T04:21:52.114524Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 ... 2026-08-28T04:21:52.115394Z 00O Using helper image: registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.3.0 2026-08-28T04:21:52.115412Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.3.0 2026-08-28T04:21:52.116295Z 00O Authenticating with credentials from job payload (GitLab Registry) 2026-08-28T04:21:52.116305Z 00O Pulling docker image registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.3.0 ... 2026-08-28T04:21:53.492536Z 00O Using docker image sha256:c346e671eac589538f0d90fe3835e994540bf7d2bb7e8d857e616c1f4b0e1620 for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.3.0 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:47b7976ad6aa1cf103ead2b453fdc67c13d16a2e3345d79f17f76b53bde50632 ... 2026-08-28T04:21:55.119395Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 2026-08-28T04:21:55.120333Z 00O Authenticating with credentials from job payload (GitLab Registry) 2026-08-28T04:21:55.120347Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 ... 2026-08-28T04:22:34.837909Z 00O Using docker image sha256:82ffa34a9a925bfecd1bf24bb3e78896fd356e1e68f45dd1566949d137bc89b4 for registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 with digest registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0@sha256:205afe10a22db0df2bf3357b0b05860f4e49b76beabd9b4eefdda77c8eefc48e ... 2026-08-28T04:22:34.837993Z 00O section_end:1787890954:prepare_executor  2026-08-28T04:22:34.838096Z 00O+section_start:1787890954:prepare_script  2026-08-28T04:22:34.838100Z 00O+Preparing environment 2026-08-28T04:22:34.839167Z 00O Using effective pull policy of [always] for container sha256:c346e671eac589538f0d90fe3835e994540bf7d2bb7e8d857e616c1f4b0e1620 2026-08-28T04:22:44.888517Z 01O Running on runner-j8vtlrhes-project-3622566-concurrent-0 via runner-j8vtlrhes-s-l-m-amd64-1787890764-ab783aad... 2026-08-28T04:22:45.054805Z 00O section_end:1787890965:prepare_script  2026-08-28T04:22:45.055440Z 00O+section_start:1787890965:get_sources  2026-08-28T04:22:45.055470Z 00O+Getting source from Git repository 2026-08-28T04:22:45.416226Z 01O Gitaly correlation ID: 2c6f2af1f150423e8b3ae8a8478ed518 2026-08-28T04:22:45.422258Z 01O Fetching changes... 2026-08-28T04:22:45.425647Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/ 2026-08-28T04:22:45.427781Z 01O Created fresh repository. 2026-08-28T04:22:51.594879Z 01O Checking out e26cf1b6 as detached HEAD (ref is master)... 2026-08-28T04:22:51.781224Z 01O 2026-08-28T04:22:51.781231Z 01O Skipping Git submodules setup 2026-08-28T04:22:51.781232Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping' 2026-08-28T04:22:51.986871Z 00O section_end:1787890971:get_sources  2026-08-28T04:22:51.987720Z 00O+section_start:1787890971:download_artifacts  2026-08-28T04:22:51.987728Z 00O+Downloading artifacts 2026-08-28T04:22:52.354392Z 01O Downloading artifacts for build (16161768334)... 2026-08-28T04:22:52.594607Z 01E Direct download from storage.googleapis.com  correlation_id=5a9a1901b9f04b668fe9e1cb108952f1 id=16161768334 status=302 token=72_uRKSzv 2026-08-28T04:22:52.877425Z 01E Downloading artifacts from coordinator... ok  correlation_id=5a9a1901b9f04b668fe9e1cb108952f1 id=16161768334 status=302 token=72_uRKSzv 2026-08-28T04:22:52.890228Z 01O Downloading artifacts for mirror-packages (16161768333)... 2026-08-28T04:22:53.182033Z 01E Direct download from storage.googleapis.com  correlation_id=45e883ea66b54e2ca2edc67cd9613990 id=16161768333 status=302 token=72_uRKSzv 2026-08-28T04:22:53.791908Z 01E Downloading artifacts from coordinator... ok  correlation_id=45e883ea66b54e2ca2edc67cd9613990 id=16161768333 status=302 token=72_uRKSzv 2026-08-28T04:22:54.835686Z 00O section_end:1787890974:download_artifacts  2026-08-28T04:22:54.836097Z 00O+section_start:1787890974:step_script  2026-08-28T04:22:54.836108Z 00O+Executing "step_script" stage of the job script 2026-08-28T04:22:54.836120Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 2026-08-28T04:22:54.837687Z 00O Using docker image sha256:82ffa34a9a925bfecd1bf24bb3e78896fd356e1e68f45dd1566949d137bc89b4 for registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 with digest registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0@sha256:205afe10a22db0df2bf3357b0b05860f4e49b76beabd9b4eefdda77c8eefc48e ... 2026-08-28T04:22:55.180436Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) . 2026-08-28T04:22:55.189950Z 01O $ mkdir -p ~/.R 2026-08-28T04:22:55.191197Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)' 2026-08-28T04:22:55.378537Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’ 2026-08-28T04:22:55.378546Z 01E 2026-08-28T04:23:30.496135Z 01E Updating HTML index of packages in '.Library' 2026-08-28T04:23:30.496900Z 01E Making 'packages.html' ... done 2026-08-28T04:23:30.507637Z 01E Warning messages: 2026-08-28T04:23:30.507638Z 01E 1: packages ‘xts’, ‘knitr’ are not available (for R version 3.5.0) 2026-08-28T04:23:30.507640Z 01E 2: In install.packages(dcf.dependencies("DESCRIPTION", which = "all"), : 2026-08-28T04:23:30.507701Z 01E installation of package ‘bit64’ had non-zero exit status 2026-08-28T04:23:30.514966Z 01O $ R CMD check --no-manual --no-build-vignettes --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1) 2026-08-28T04:23:30.671660Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’ 2026-08-28T04:23:30.671742Z 01O * using R version 3.5.0 (2018-04-23) 2026-08-28T04:23:30.672072Z 01O * using platform: x86_64-pc-linux-gnu (64-bit) 2026-08-28T04:23:30.672269Z 01O * using session charset: UTF-8 2026-08-28T04:23:31.243795Z 01O * using options ‘--no-manual --ignore-vignettes’ 2026-08-28T04:23:31.243901Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK 2026-08-28T04:23:31.246530Z 01O * this is package ‘data.table’ version ‘1.18.99’ 2026-08-28T04:23:31.246757Z 01O * package encoding: UTF-8 2026-08-28T04:23:31.246965Z 01O * checking package namespace information ... OK 2026-08-28T04:23:31.252984Z 01O * checking package dependencies ... NOTE 2026-08-28T04:23:35.390785Z 01O Packages suggested but not available for checking: ‘bit64’ ‘xts’ 2026-08-28T04:23:35.390789Z 01O 2026-08-28T04:23:35.390790Z 01O Package which this enhances but not available for checking: ‘knitr’ 2026-08-28T04:23:35.390803Z 01O * checking if this is a source package ... OK 2026-08-28T04:23:35.395173Z 01O * checking if there is a namespace ... OK 2026-08-28T04:23:35.400754Z 01O * checking for executable files ... OK 2026-08-28T04:23:36.217387Z 01O * checking for hidden files and directories ... OK 2026-08-28T04:23:36.220975Z 01O * checking for portable file names ... OK 2026-08-28T04:23:36.227917Z 01O * checking for sufficient/correct file permissions ... OK 2026-08-28T04:23:36.229972Z 01O * checking whether package ‘data.table’ can be installed ... OK 2026-08-28T04:23:58.781551Z 01O * checking installed package size ... NOTE 2026-08-28T04:23:58.784252Z 01O installed size is 9.0Mb 2026-08-28T04:23:58.784905Z 01O sub-directories of 1Mb or more: 2026-08-28T04:23:58.785528Z 01O doc 1.1Mb 2026-08-28T04:23:58.785529Z 01O libs 2.6Mb 2026-08-28T04:23:58.785530Z 01O po 1.7Mb 2026-08-28T04:23:58.785531Z 01O tests 2.2Mb 2026-08-28T04:23:58.785620Z 01O * checking package directory ... OK 2026-08-28T04:23:58.928890Z 01E Warning in c.person(person("Tyson", "Barrett", role = c("aut", "cre"), email = "t.barrett88@gmail.com", : 2026-08-28T04:23:58.928897Z 01E method is only applicable to ‘person’ objects 2026-08-28T04:23:58.786110Z 01O * checking DESCRIPTION meta-information ... OK 2026-08-28T04:23:58.959795Z 01O * checking top-level files ... OK 2026-08-28T04:23:58.960208Z 01O * checking for left-over files ... OK 2026-08-28T04:23:58.963052Z 01O * checking index information ... OK 2026-08-28T04:23:59.106610Z 01O * checking package subdirectories ... OK 2026-08-28T04:23:59.291698Z 01O * checking R files for non-ASCII characters ... OK 2026-08-28T04:23:59.338951Z 01O * checking R files for syntax errors ... OK 2026-08-28T04:23:59.433986Z 01O * checking whether the package can be loaded ... OK 2026-08-28T04:23:59.600995Z 01O * checking whether the package can be loaded with stated dependencies ... OK 2026-08-28T04:23:59.739292Z 01O * checking whether the package can be unloaded cleanly ... OK 2026-08-28T04:23:59.876256Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK 2026-08-28T04:24:00.013152Z 01O * checking whether the namespace can be unloaded cleanly ... OK 2026-08-28T04:24:00.184330Z 01O * checking loading without being on the library search path ... OK 2026-08-28T04:24:00.356486Z 01O * checking dependencies in R code ... OK 2026-08-28T04:24:00.925086Z 01O * checking S3 generic/method consistency ... OK 2026-08-28T04:24:01.515582Z 01O * checking replacement functions ... OK 2026-08-28T04:24:01.687425Z 01O * checking foreign function calls ... OK 2026-08-28T04:24:02.309030Z 01O * checking R code for possible problems ... OK 2026-08-28T04:24:10.833230Z 01O * checking Rd files ... OK 2026-08-28T04:24:11.156284Z 01O * checking Rd metadata ... OK 2026-08-28T04:24:11.197812Z 01O * checking Rd cross-references ... NOTE 2026-08-28T04:24:15.688430Z 01O Package unavailable to check Rd xrefs: ‘bit64’ 2026-08-28T04:24:15.688440Z 01O * checking for missing documentation entries ... OK 2026-08-28T04:24:15.886784Z 01O * checking for code/documentation mismatches ... OK 2026-08-28T04:24:16.765965Z 01O * checking Rd \usage sections ... OK 2026-08-28T04:24:17.776317Z 01O * checking Rd contents ... OK 2026-08-28T04:24:18.085912Z 01O * checking for unstated dependencies in examples ... OK 2026-08-28T04:24:18.535016Z 01O * checking line endings in shell scripts ... OK 2026-08-28T04:24:18.535597Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK 2026-08-28T04:24:18.543394Z 01O * checking line endings in Makefiles ... OK 2026-08-28T04:24:18.543761Z 01O * checking compilation flags in Makevars ... OK 2026-08-28T04:24:18.596148Z 01O * checking for GNU extensions in Makefiles ... OK 2026-08-28T04:24:18.596856Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK 2026-08-28T04:24:18.599517Z 01O * checking compiled code ... NOTE 2026-08-28T04:24:18.652730Z 01O File ‘data.table/libs/data.table.so’: 2026-08-28T04:24:18.652741Z 01O Found non-API calls to R: ‘R_GetConnection’, ‘R_ReadConnection’ 2026-08-28T04:24:18.653225Z 01O 2026-08-28T04:24:18.653227Z 01O Compiled code should not call non-API entry points in R. 2026-08-28T04:24:18.653228Z 01O 2026-08-28T04:24:18.653229Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. 2026-08-28T04:24:18.653704Z 01O * checking installed files from ‘inst/doc’ ... OK 2026-08-28T04:24:18.722960Z 01O * checking files in ‘vignettes’ ... SKIPPED 2026-08-28T04:24:18.723171Z 01O * checking examples ... OK 2026-08-28T04:24:21.989273Z 01O * checking for unstated dependencies in ‘tests’ ... OK 2026-08-28T04:24:22.047333Z 01O * checking tests ... 2026-08-28T04:24:22.172692Z 01E Running ‘autoprint.R’ 2026-08-28T04:24:22.401934Z 01O 18,21d17 2026-08-28T04:24:22.401937Z 01O < a 2026-08-28T04:24:22.401938Z 01O < 2026-08-28T04:24:22.401938Z 01O < 1: 1 2026-08-28T04:24:22.401939Z 01O < 2: 3 2026-08-28T04:24:22.401939Z 01O 28,31d23 2026-08-28T04:24:22.401940Z 01O < a 2026-08-28T04:24:22.401940Z 01O < 2026-08-28T04:24:22.401941Z 01O < 1: 1 2026-08-28T04:24:22.401941Z 01O < 2: 3 2026-08-28T04:24:22.401941Z 01O 33,37d24 2026-08-28T04:24:22.401942Z 01O < Index: 2026-08-28T04:24:22.401942Z 01O < a 2026-08-28T04:24:22.401943Z 01O < 2026-08-28T04:24:22.401943Z 01O < 1: 1 2026-08-28T04:24:22.401943Z 01O < 2: 3 2026-08-28T04:24:22.401944Z 01O 39,43d25 2026-08-28T04:24:22.401944Z 01O < Index: 2026-08-28T04:24:22.401944Z 01O < a 2026-08-28T04:24:22.401945Z 01O < 2026-08-28T04:24:22.401945Z 01O < 1: 1 2026-08-28T04:24:22.401945Z 01O < 2: 3 2026-08-28T04:24:22.401946Z 01O 61,64d42 2026-08-28T04:24:22.401946Z 01O < a 2026-08-28T04:24:22.401947Z 01O < 2026-08-28T04:24:22.401947Z 01O < 1: 1 2026-08-28T04:24:22.401947Z 01O < 2: 5 2026-08-28T04:24:22.401948Z 01O 66,69d43 2026-08-28T04:24:22.401948Z 01O < a 2026-08-28T04:24:22.401948Z 01O < 2026-08-28T04:24:22.401949Z 01O < 1: 1 2026-08-28T04:24:22.401949Z 01O < 2: 6 2026-08-28T04:24:22.401949Z 01O 73,76d46 2026-08-28T04:24:22.401950Z 01O < a 2026-08-28T04:24:22.401950Z 01O < 2026-08-28T04:24:22.401951Z 01O < 1: 1 2026-08-28T04:24:22.401951Z 01O < 2: 5 2026-08-28T04:24:22.401951Z 01O 143,145d112 2026-08-28T04:24:22.401952Z 01O < a 2026-08-28T04:24:22.401952Z 01O < 2026-08-28T04:24:22.401952Z 01O < 1: 9 2026-08-28T04:24:22.401953Z 01O 151,154d117 2026-08-28T04:24:22.401953Z 01O < a 2026-08-28T04:24:22.401953Z 01O < 2026-08-28T04:24:22.401954Z 01O < 1: 10 2026-08-28T04:24:22.401954Z 01O < 2: 10 2026-08-28T04:24:22.401955Z 01O 156,159d118 2026-08-28T04:24:22.401955Z 01O < a 2026-08-28T04:24:22.401955Z 01O < 2026-08-28T04:24:22.401956Z 01O < 1: 10 2026-08-28T04:24:22.401956Z 01O < 2: 10 2026-08-28T04:24:22.401956Z 01O 161,164d119 2026-08-28T04:24:22.401957Z 01O < a 2026-08-28T04:24:22.401957Z 01O < 2026-08-28T04:24:22.401957Z 01O < 1: 10 2026-08-28T04:24:22.401958Z 01O < 2: 10 2026-08-28T04:24:22.401958Z 01O 210,212d164 2026-08-28T04:24:22.401959Z 01O < x y 2026-08-28T04:24:22.401959Z 01O < 2026-08-28T04:24:22.401959Z 01O < 1: 1 1 2026-08-28T04:24:22.396659Z 01E Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... Running ‘froll.R’ 2026-08-28T04:33:21.574941Z 01E Running ‘litedown.R’ 2026-08-28T04:33:21.845614Z 01E Running ‘main.R’ 2026-08-28T04:33:52.802855Z 01E Running ‘mergelist.R’ 2026-08-28T04:33:54.032924Z 01E Running ‘nafill.R’ 2026-08-28T04:33:54.393736Z 01E Running ‘optimize.R’ 2026-08-28T04:33:55.450190Z 01E Running ‘other.R’ 2026-08-28T04:33:55.633988Z 01E Running ‘programming.R’ 2026-08-28T04:33:56.140541Z 01E Running ‘S4.R’ 2026-08-28T04:33:56.414791Z 01E Running ‘self.R’ 2026-08-28T04:33:56.614869Z 01E Running ‘types.R’ 2026-08-28T04:33:56.831155Z 01O OK 2026-08-28T04:33:56.832064Z 01O * DONE 2026-08-28T04:33:56.832453Z 01E 2026-08-28T04:33:56.832564Z 01O Status: 4 NOTEs 2026-08-28T04:33:56.832744Z 01E See 2026-08-28T04:33:56.832745Z 01E ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’ 2026-08-28T04:33:56.832747Z 01E for details. 2026-08-28T04:33:56.832747Z 01E 2026-08-28T04:33:56.833030Z 01E 2026-08-28T04:33:57.018178Z 00O section_end:1787891637:step_script  2026-08-28T04:33:57.018626Z 00O+section_start:1787891637:after_script  2026-08-28T04:33:57.018633Z 00O+Running after_script 2026-08-28T04:33:57.353988Z 01O Running after script... 2026-08-28T04:33:57.354020Z 01O $ mkdir -p bus/$CI_JOB_NAME 2026-08-28T04:33:57.355059Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id 2026-08-28T04:33:57.355127Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status 2026-08-28T04:33:57.355316Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image 2026-08-28T04:33:57.355321Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/ 2026-08-28T04:33:57.517071Z 00O section_end:1787891637:after_script  2026-08-28T04:33:57.517861Z 00O+section_start:1787891637:upload_artifacts_on_success  2026-08-28T04:33:57.517867Z 00O+Uploading artifacts for successful job 2026-08-28T04:33:57.890536Z 01O Uploading artifacts... 2026-08-28T04:33:57.945797Z 01E bus/test-lin-ancient-cran: found 701 matching artifact files and directories 2026-08-28T04:33:59.199236Z 01E Uploading artifacts as "archive" to coordinator... 201 Created correlation_id=531978dfd06f4e2388f96fb71ffd6155 id=16161768340 status=201 token=72_uRKSzv 2026-08-28T04:33:59.374764Z 00O section_end:1787891639:upload_artifacts_on_success  2026-08-28T04:33:59.375152Z 00O+section_start:1787891639:cleanup_file_variables  2026-08-28T04:33:59.375159Z 00O+Cleaning up project directory and file based variables 2026-08-28T04:33:59.886963Z 00O section_end:1787891639:cleanup_file_variables  2026-08-28T04:33:59.913728Z 00O Job succeeded