2025-12-26T04:21:31.836041Z 00O Running with gitlab-runner 18.7.0~pre.433.g3a5f2314 (3a5f2314)
2025-12-26T04:21:31.836055Z 00O   on blue-1.saas-linux-medium.runners-manager.gitlab.com/default 2QMMJaNnp, system ID: s_406404729ae4
2025-12-26T04:21:31.836077Z 00O Resolving secrets
2025-12-26T04:21:31.836206Z 00O section_start:1766722891:prepare_executor
2025-12-26T04:21:31.836207Z 00O+Preparing the "docker+machine" executor
2025-12-26T04:21:31.967622Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-san ...
2025-12-26T04:21:36.343380Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-san
2025-12-26T04:21:36.344033Z 00O Authenticating with credentials from job payload (GitLab Registry)
2025-12-26T04:21:36.344043Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-san ...
2025-12-26T04:21:53.495409Z 00O Using docker image sha256:bb53154b66a0f956a3087e192035a2145e87e5082bebabacf828921706ceb4c9 for registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-san with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-san@sha256:49dcd45e69f2d7f75f9955549cf4c604d9335960e065c5ee69f07b137ccf9ad0 ...
2025-12-26T04:21:53.495482Z 00O section_end:1766722913:prepare_executor
2025-12-26T04:21:53.495484Z 00O+section_start:1766722913:prepare_script
2025-12-26T04:21:53.495554Z 00O+Preparing environment
2025-12-26T04:21:53.496782Z 00O Using effective pull policy of [always] for container sha256:968bf6fb8d534e90144df7a613cf5cd7ff41c3cc858850296f06343a1be7068b
2025-12-26T04:22:03.533109Z 01O Running on runner-2qmmjannp-project-3622566-concurrent-0 via runner-2qmmjannp-s-l-m-amd64-1766722655-e60034ef...
2025-12-26T04:22:03.713159Z 00O section_end:1766722923:prepare_script
2025-12-26T04:22:03.713166Z 00O+section_start:1766722923:get_sources
2025-12-26T04:22:03.713619Z 00O+Getting source from Git repository
2025-12-26T04:22:04.111861Z 01O Gitaly correlation ID: ecba0a8138ef47d895250d2102e7c185
2025-12-26T04:22:04.117260Z 01O Fetching changes...
2025-12-26T04:22:04.120473Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2025-12-26T04:22:04.122670Z 01O Created fresh repository.
2025-12-26T04:22:09.712001Z 01O Checking out a29c209b as detached HEAD (ref is master)...
2025-12-26T04:22:09.900864Z 01O 
2025-12-26T04:22:09.900871Z 01O Skipping Git submodules setup
2025-12-26T04:22:09.900872Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2025-12-26T04:22:10.135623Z 00O section_end:1766722930:get_sources
2025-12-26T04:22:10.135719Z 00O+section_start:1766722930:download_artifacts
2025-12-26T04:22:10.136481Z 00O+Downloading artifacts
2025-12-26T04:22:10.554326Z 01O Downloading artifacts for mirror-packages (12544376784)...
2025-12-26T04:22:11.575920Z 01E Downloading artifacts from coordinator... ok        correlation_id=3e1c446da02b43fb9db8bf79dcfd3318 host=storage.googleapis.com id=12544376784 responseStatus=200 OK token=6b_E_GjER
2025-12-26T04:22:11.797827Z 01O Downloading artifacts for build (12544376788)...
2025-12-26T04:22:12.102909Z 01E Downloading artifacts from coordinator... ok        correlation_id=4497733e66464720bdc019878d9f5c54 host=storage.googleapis.com id=12544376788 responseStatus=200 OK token=6b_E_GjER
2025-12-26T04:22:12.799935Z 00O section_end:1766722932:download_artifacts
2025-12-26T04:22:12.799943Z 00O+section_start:1766722932:step_script
2025-12-26T04:22:12.800397Z 00O+Executing "step_script" stage of the job script
2025-12-26T04:22:12.800419Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-san
2025-12-26T04:22:12.801509Z 00O Using docker image sha256:bb53154b66a0f956a3087e192035a2145e87e5082bebabacf828921706ceb4c9 for registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-san with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-san@sha256:49dcd45e69f2d7f75f9955549cf4c604d9335960e065c5ee69f07b137ccf9ad0 ...
2025-12-26T04:22:13.193589Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2025-12-26T04:22:13.203464Z 01O $ mkdir -p ~/.R
2025-12-26T04:22:13.205077Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2025-12-26T04:22:13.899843Z 01E also installing the dependencies ‘commonmark’, ‘R.oo’, ‘R.methodsS3’, ‘lattice’, ‘evaluate’, ‘highr’, ‘xfun’, ‘litedown’
2025-12-26T04:22:13.899848Z 01E 
2025-12-26T04:26:26.065425Z 01E Updating HTML index of packages in '.Library'
2025-12-26T04:26:26.066331Z 01E Making 'packages.html' ... done
2025-12-26T04:26:26.111007Z 01O $ res1=0; ASAN_OPTIONS=detect_leaks=1 R CMD check --no-manual $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command
2025-12-26T04:26:27.697096Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2025-12-26T04:26:27.697807Z 01O * using R Under development (unstable) (2025-12-24 r89227)
2025-12-26T04:26:27.698638Z 01O * using platform: x86_64-pc-linux-gnu
2025-12-26T04:26:27.699386Z 01O * R was compiled by
2025-12-26T04:26:27.700030Z 01O     gcc (Debian 15.2.0-11) 15.2.0
2025-12-26T04:26:27.700031Z 01O     GNU Fortran (Debian 15.2.0-11) 15.2.0
2025-12-26T04:26:27.700776Z 01O * running under: Debian GNU/Linux forky/sid
2025-12-26T04:26:27.701496Z 01O * using session charset: UTF-8
2025-12-26T04:26:30.174006Z 01O * using option ‘--no-manual’
2025-12-26T04:26:30.175231Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2025-12-26T04:26:30.183298Z 01O * this is package ‘data.table’ version ‘1.18.99’
2025-12-26T04:26:30.184061Z 01O * package encoding: UTF-8
2025-12-26T04:26:30.184873Z 01O * checking package namespace information ... OK
2025-12-26T04:26:30.215718Z 01O * checking package dependencies ... OK
2025-12-26T04:26:33.021445Z 01O * checking if this is a source package ... OK
2025-12-26T04:26:33.042698Z 01O * checking if there is a namespace ... OK
2025-12-26T04:26:33.050054Z 01O * checking for .dll and .exe files ... OK
2025-12-26T04:26:33.052006Z 01O * checking for hidden files and directories ... OK
2025-12-26T04:26:33.061082Z 01O * checking for portable file names ... OK
2025-12-26T04:26:33.074899Z 01O * checking for sufficient/correct file permissions ... OK
2025-12-26T04:26:33.078673Z 01O * checking whether package ‘data.table’ can be installed ... OK
2025-12-26T04:27:47.332073Z 01O * used C compiler: ‘gcc (Debian 15.2.0-11) 15.2.0’
2025-12-26T04:27:47.332597Z 01O * checking installed package size ... INFO
2025-12-26T04:27:47.338681Z 01O   installed size is 15.4Mb
2025-12-26T04:27:47.340698Z 01O   sub-directories of 1Mb or more:
2025-12-26T04:27:47.342288Z 01O     doc     1.0Mb
2025-12-26T04:27:47.342289Z 01O     libs    9.2Mb
2025-12-26T04:27:47.342290Z 01O     po      1.7Mb
2025-12-26T04:27:47.342290Z 01O     tests   2.1Mb
2025-12-26T04:27:47.342841Z 01O * checking package directory ... OK
2025-12-26T04:27:47.344065Z 01O * checking ‘build’ directory ... OK
2025-12-26T04:27:47.346330Z 01O * checking DESCRIPTION meta-information ... OK
2025-12-26T04:27:50.093333Z 01O * checking top-level files ... OK
2025-12-26T04:27:50.096057Z 01O * checking for left-over files ... OK
2025-12-26T04:27:50.101611Z 01O * checking index information ... OK
2025-12-26T04:27:51.358764Z 01O * checking package subdirectories ... OK
2025-12-26T04:27:53.738271Z 01O * checking code files for non-ASCII characters ... OK
2025-12-26T04:27:53.954184Z 01O * checking R files for syntax errors ... OK
2025-12-26T04:27:54.282131Z 01O * checking whether the package can be loaded ... OK
2025-12-26T04:27:55.036803Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2025-12-26T04:27:55.645805Z 01O * checking whether the package can be unloaded cleanly ... OK
2025-12-26T04:27:56.260336Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2025-12-26T04:27:56.883911Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2025-12-26T04:27:57.646521Z 01O * checking loading without being on the library search path ... OK
2025-12-26T04:27:59.145180Z 01O * checking whether startup messages can be suppressed ... OK
2025-12-26T04:27:59.873193Z 01O * checking dependencies in R code ... OK
2025-12-26T04:28:02.955049Z 01O * checking S3 generic/method consistency ... OK
2025-12-26T04:28:04.295128Z 01O * checking replacement functions ... OK
2025-12-26T04:28:04.991113Z 01O * checking foreign function calls ... OK
2025-12-26T04:28:07.947164Z 01O * checking R code for possible problems ... OK
2025-12-26T04:28:13.460132Z 01O * checking Rd files ... OK
2025-12-26T04:28:16.158791Z 01O * checking Rd metadata ... OK
2025-12-26T04:28:16.338544Z 01O * checking Rd cross-references ... OK
2025-12-26T04:28:17.512761Z 01O * checking for missing documentation entries ... OK
2025-12-26T04:28:18.410089Z 01O * checking for code/documentation mismatches ... OK
2025-12-26T04:28:22.114184Z 01O * checking Rd \usage sections ... OK
2025-12-26T04:28:25.482569Z 01O * checking Rd contents ... OK
2025-12-26T04:28:27.290087Z 01O * checking for unstated dependencies in examples ... OK
2025-12-26T04:28:28.929753Z 01O * checking line endings in shell scripts ... OK
2025-12-26T04:28:28.931243Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2025-12-26T04:28:28.988539Z 01O * checking line endings in Makefiles ... OK
2025-12-26T04:28:28.990739Z 01O * checking compilation flags in Makevars ... OK
2025-12-26T04:28:29.170107Z 01O * checking for GNU extensions in Makefiles ... OK
2025-12-26T04:28:29.172708Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2025-12-26T04:28:29.176476Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2025-12-26T04:28:29.204342Z 01O * checking compiled code ... NOTE
2025-12-26T04:28:29.457020Z 01O File ‘data.table/libs/data_table.so’:
2025-12-26T04:28:29.457021Z 01O   Found non-API calls to R: ‘ATTRIB’, ‘SET_ATTRIB’
2025-12-26T04:28:29.458629Z 01O 
2025-12-26T04:28:29.458629Z 01O Compiled code should not call non-API entry points in R.
2025-12-26T04:28:29.458630Z 01O 
2025-12-26T04:28:29.458631Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
2025-12-26T04:28:29.458631Z 01O and section ‘Moving into C API compliance’ for issues with the use of
2025-12-26T04:28:29.458632Z 01O non-API entry points.
2025-12-26T04:28:29.460293Z 01O * checking installed files from ‘inst/doc’ ... OK
2025-12-26T04:28:30.531504Z 01O * checking files in ‘vignettes’ ... OK
2025-12-26T04:28:31.605719Z 01O * checking examples ... OK
2025-12-26T04:28:40.146032Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2025-12-26T04:28:40.382113Z 01O * checking tests ...
2025-12-26T04:28:40.835134Z 01E   Running ‘autoprint.R’
2025-12-26T04:28:41.647997Z 01E   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2025-12-26T04:28:41.663666Z 01E   Running ‘froll.R’
2025-12-26T04:59:20.485341Z 01E   Running ‘knitr.R’
2025-12-26T04:59:21.454831Z 01E   Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
2025-12-26T04:59:21.464420Z 01E   Running ‘main.R’
2025-12-26T05:01:40.870027Z 01E   Running ‘mergelist.R’
2025-12-26T05:01:46.801104Z 01E   Running ‘nafill.R’
2025-12-26T05:01:48.240457Z 01E   Running ‘other.R’
2025-12-26T05:01:48.939192Z 01E   Running ‘programming.R’
2025-12-26T05:01:50.891858Z 01E   Running ‘S4.R’
2025-12-26T05:01:51.971458Z 01E   Running ‘types.R’
2025-12-26T05:01:52.859472Z 01O  OK
2025-12-26T05:01:53.299651Z 01O * checking for unstated dependencies in vignettes ... OK
2025-12-26T05:01:54.730106Z 01O * checking package vignettes ... OK
2025-12-26T05:01:55.980066Z 01O * checking re-building of vignette outputs ... OK
2025-12-26T05:03:02.886300Z 01O * DONE
2025-12-26T05:03:02.887291Z 01E 
2025-12-26T05:03:02.887604Z 01O Status: 1 NOTE
2025-12-26T05:03:02.888080Z 01E See
2025-12-26T05:03:02.888081Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2025-12-26T05:03:02.888082Z 01E for details.
2025-12-26T05:03:02.888379Z 01E 
2025-12-26T05:03:03.331982Z 00O section_end:1766725383:step_script
2025-12-26T05:03:03.332003Z 00O+section_start:1766725383:after_script
2025-12-26T05:03:03.332414Z 00O+Running after_script
2025-12-26T05:03:03.678741Z 01O Running after script...
2025-12-26T05:03:03.678770Z 01O $ mkdir -p bus/$CI_JOB_NAME
2025-12-26T05:03:03.679912Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2025-12-26T05:03:03.679913Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2025-12-26T05:03:03.680001Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2025-12-26T05:03:03.680117Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2025-12-26T05:03:03.849126Z 00O section_end:1766725383:after_script
2025-12-26T05:03:03.849134Z 00O+section_start:1766725383:upload_artifacts_on_success
2025-12-26T05:03:03.849959Z 00O+Uploading artifacts for successful job
2025-12-26T05:03:04.251286Z 01O Uploading artifacts...
2025-12-26T05:03:04.320367Z 01E bus/test-lin-dev-gcc-san: found 672 matching artifact files and directories 
2025-12-26T05:03:07.682935Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=7fe13d9d682c43c9a5af3a52a5d46b9b id=12544376805 responseStatus=201 Created token=6b_E_GjER
2025-12-26T05:03:07.850292Z 00O section_end:1766725387:upload_artifacts_on_success
2025-12-26T05:03:07.850299Z 00O+section_start:1766725387:cleanup_file_variables
2025-12-26T05:03:07.850395Z 00O+Cleaning up project directory and file based variables
2025-12-26T05:03:08.354341Z 00O section_end:1766725388:cleanup_file_variables
2025-12-26T05:03:08.354348Z 00O+
2025-12-26T05:03:08.397540Z 00O Job succeeded