2026-08-28T04:21:51.782561Z 00O Running with gitlab-runner 19.3.0 (9cbf0074)
2026-08-28T04:21:51.782582Z 00O   on k8s.saas-linux-medium-amd64.runners-manager.gitlab.com/default j8vTLRhES, system ID: r_9pnhnO4yNuPC
2026-08-28T04:21:51.782588Z 00O   feature flags: FF_USE_FASTZIP:true, FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true
2026-08-28T04:21:51.782618Z 00O Resolving secrets
2026-08-28T04:21:51.782817Z 00O section_start:1787890911:prepare_executor

2026-08-28T04:21:51.782820Z 00O+Preparing the "docker+machine" executor
2026-08-28T04:21:51.944884Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict ...
2026-08-28T04:21:51.945878Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.3.0
2026-08-28T04:21:51.945896Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.3.0
2026-08-28T04:21:51.946559Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-08-28T04:21:51.946566Z 00O Pulling docker image registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.3.0 ...
2026-08-28T04:21:53.431250Z 00O Using docker image sha256:c346e671eac589538f0d90fe3835e994540bf7d2bb7e8d857e616c1f4b0e1620 for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.3.0 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:47b7976ad6aa1cf103ead2b453fdc67c13d16a2e3345d79f17f76b53bde50632 ...
2026-08-28T04:21:55.016680Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict
2026-08-28T04:21:55.017405Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-08-28T04:21:55.017416Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict ...
2026-08-28T04:22:17.369538Z 00O Using docker image sha256:efc7f23ebe4b86d42585e620985e66592c73d38660204f57396ec385d66363cc for registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict@sha256:30d49136f1040db37a7916dcd9316c031b55499d20399a0c10ba17dd025065fe ...
2026-08-28T04:22:17.369629Z 00O section_end:1787890937:prepare_executor

2026-08-28T04:22:17.369737Z 00O+section_start:1787890937:prepare_script

2026-08-28T04:22:17.369741Z 00O+Preparing environment
2026-08-28T04:22:17.371019Z 00O Using effective pull policy of [always] for container sha256:c346e671eac589538f0d90fe3835e994540bf7d2bb7e8d857e616c1f4b0e1620
2026-08-28T04:22:21.902890Z 01O Running on runner-j8vtlrhes-project-3622566-concurrent-0 via runner-j8vtlrhes-s-l-m-amd64-1787890817-b038088a...
2026-08-28T04:22:22.058793Z 00O section_end:1787890942:prepare_script

2026-08-28T04:22:22.059392Z 00O+section_start:1787890942:get_sources

2026-08-28T04:22:22.059399Z 00O+Getting source from Git repository
2026-08-28T04:22:22.423554Z 01O Gitaly correlation ID: 6369d40364bc46fbbb9dff4aec0e565b
2026-08-28T04:22:22.429650Z 01O Fetching changes...
2026-08-28T04:22:22.432949Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-08-28T04:22:22.435068Z 01O Created fresh repository.
2026-08-28T04:22:28.427029Z 01O Checking out e26cf1b6 as detached HEAD (ref is master)...
2026-08-28T04:22:28.611851Z 01O 
2026-08-28T04:22:28.611857Z 01O Skipping Git submodules setup
2026-08-28T04:22:28.611863Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-08-28T04:22:28.820723Z 00O section_end:1787890948:get_sources

2026-08-28T04:22:28.821517Z 00O+section_start:1787890948:download_artifacts

2026-08-28T04:22:28.821525Z 00O+Downloading artifacts
2026-08-28T04:22:29.211455Z 01O Downloading artifacts for build (16161768334)...
2026-08-28T04:22:29.448271Z 01E Direct download from storage.googleapis.com         correlation_id=9f117773c3ed4addb424a9f332e8951b id=16161768334 status=302 token=72_UiNRGW
2026-08-28T04:22:29.715290Z 01E Downloading artifacts from coordinator... ok        correlation_id=9f117773c3ed4addb424a9f332e8951b id=16161768334 status=302 token=72_UiNRGW
2026-08-28T04:22:29.728707Z 01O Downloading artifacts for mirror-packages (16161768333)...
2026-08-28T04:22:29.897463Z 01E Direct download from storage.googleapis.com         correlation_id=ec61d3fe1c4e4352863f571949d7aa09 id=16161768333 status=302 token=72_UiNRGW
2026-08-28T04:22:30.741282Z 01E Downloading artifacts from coordinator... ok        correlation_id=ec61d3fe1c4e4352863f571949d7aa09 id=16161768333 status=302 token=72_UiNRGW
2026-08-28T04:22:31.775576Z 00O section_end:1787890951:download_artifacts

2026-08-28T04:22:31.775993Z 00O+section_start:1787890951:step_script

2026-08-28T04:22:31.776001Z 00O+Executing "step_script" stage of the job script
2026-08-28T04:22:31.776012Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict
2026-08-28T04:22:31.776983Z 00O Using docker image sha256:efc7f23ebe4b86d42585e620985e66592c73d38660204f57396ec385d66363cc for registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict@sha256:30d49136f1040db37a7916dcd9316c031b55499d20399a0c10ba17dd025065fe ...
2026-08-28T04:22:32.114165Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-08-28T04:22:32.123999Z 01O $ mkdir -p ~/.R
2026-08-28T04:22:32.125803Z 01O $ echo 'CFLAGS=-g -O2 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-08-28T04:22:32.125813Z 01O $ echo 'CXXFLAGS=-g -O2 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-08-28T04:22:32.125845Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-08-28T04:22:32.468321Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘lattice’, ‘commonmark’, ‘evaluate’, ‘highr’
2026-08-28T04:22:32.468332Z 01E 
2026-08-28T04:24:45.458076Z 01E Updating HTML index of packages in '.Library'
2026-08-28T04:24:45.458088Z 01E Making 'packages.html' ... done
2026-08-28T04:24:45.475775Z 01O $ R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1)
2026-08-28T04:24:46.681768Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-08-28T04:24:46.681947Z 01O * using R Under development (unstable) (2026-08-25 r90448)
2026-08-28T04:24:46.682281Z 01O * using platform: x86_64-pc-linux-gnu
2026-08-28T04:24:46.682584Z 01O * R was compiled by
2026-08-28T04:24:46.682772Z 01O     gcc (Debian 15.3.0-2) 15.3.0
2026-08-28T04:24:46.682773Z 01O     GNU Fortran (Debian 15.3.0-2) 15.3.0
2026-08-28T04:24:46.683033Z 01O * running under: Debian GNU/Linux forky/sid
2026-08-28T04:24:46.683270Z 01O * using session charset: UTF-8
2026-08-28T04:24:46.684050Z 01O * current time: 2026-08-28 04:24:46 UTC
2026-08-28T04:24:48.855872Z 01O * using option ‘--as-cran’
2026-08-28T04:24:48.856192Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-08-28T04:24:48.859742Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-08-28T04:24:48.859996Z 01O * package encoding: UTF-8
2026-08-28T04:24:48.860272Z 01O * checking CRAN incoming feasibility ... NOTE
2026-08-28T04:24:50.041715Z 01O Maintainer: ‘Tyson Barrett <t.barrett88@gmail.com>’
2026-08-28T04:24:50.041718Z 01O 
2026-08-28T04:24:50.041719Z 01O Authors@R field should be a call to person(), or combine such calls.
2026-08-28T04:24:50.041998Z 01O * checking package namespace information ... OK
2026-08-28T04:24:50.055217Z 01O * checking package dependencies ... OK
2026-08-28T04:24:51.478778Z 01O * checking if this is a source package ... OK
2026-08-28T04:24:51.482076Z 01O * checking if there is a namespace ... OK
2026-08-28T04:24:51.486625Z 01O * checking for .dll and .exe files ... OK
2026-08-28T04:24:51.487274Z 01O * checking for hidden files and directories ... OK
2026-08-28T04:24:51.490200Z 01O * checking for portable file names ... OK
2026-08-28T04:24:51.495144Z 01O * checking for sufficient/correct file permissions ... OK
2026-08-28T04:24:51.500752Z 01O * checking whether package ‘data.table’ can be installed ... [47s/31s] OK
2026-08-28T04:25:22.218256Z 01O * used C compiler: ‘gcc (Debian 15.3.0-2) 15.3.0’
2026-08-28T04:25:22.218693Z 01O * checking installed package size ... INFO
2026-08-28T04:25:22.223633Z 01O   installed size is  8.7Mb
2026-08-28T04:25:22.224696Z 01O   sub-directories of 1Mb or more:
2026-08-28T04:25:22.225403Z 01O     doc     1.1Mb
2026-08-28T04:25:22.225404Z 01O     libs    2.2Mb
2026-08-28T04:25:22.225405Z 01O     po      1.7Mb
2026-08-28T04:25:22.225406Z 01O     tests   2.2Mb
2026-08-28T04:25:22.239920Z 01O * checking package directory ... OK
2026-08-28T04:25:22.240380Z 01O * checking for future file timestamps ... OK
2026-08-28T04:25:22.241189Z 01O * checking ‘build’ directory ... OK
2026-08-28T04:25:22.242547Z 01O * checking DESCRIPTION meta-information ... OK
2026-08-28T04:25:23.823877Z 01O * checking top-level files ... OK
2026-08-28T04:25:25.264004Z 01O * checking for left-over files ... OK
2026-08-28T04:25:25.267077Z 01O * checking index information ... OK
2026-08-28T04:25:25.470731Z 01O * checking package subdirectories ... OK
2026-08-28T04:25:25.964261Z 01O * checking code files for non-ASCII characters ... OK
2026-08-28T04:25:26.022243Z 01O * checking R files for syntax errors ... OK
2026-08-28T04:25:26.116013Z 01O * checking whether the package can be loaded ... OK
2026-08-28T04:25:26.438519Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-08-28T04:25:26.658035Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-08-28T04:25:26.877559Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-08-28T04:25:27.105764Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-08-28T04:25:27.430857Z 01O * checking loading without being on the library search path ... OK
2026-08-28T04:25:28.063830Z 01O * checking whether startup messages can be suppressed ... OK
2026-08-28T04:25:28.372948Z 01O * checking use of S3 registration ... OK
2026-08-28T04:25:28.409273Z 01O * checking dependencies in R code ... OK
2026-08-28T04:25:30.268285Z 01O * checking S3 generic/method consistency ... OK
2026-08-28T04:25:30.842691Z 01O * checking replacement functions ... OK
2026-08-28T04:25:31.097421Z 01O * checking foreign function calls ... OK
2026-08-28T04:25:33.344939Z 01O * checking R code for possible problems ... [48s/48s] OK
2026-08-28T04:26:21.200857Z 01O * checking Rd files ... OK
2026-08-28T04:26:22.789085Z 01O * checking Rd metadata ... OK
2026-08-28T04:26:22.844228Z 01O * checking Rd line widths ... NOTE
2026-08-28T04:26:23.426191Z 01O Rd file 'nafill.Rd':
2026-08-28T04:26:23.426193Z 01O   \usage lines wider than 90 characters:
2026-08-28T04:26:23.426195Z 01O      setnafill(x, type=c("const", "locf", "nocb"), fill=NA, nan=NA, cols=seq_along(x), limit=Inf)
2026-08-28T04:26:23.426196Z 01O 
2026-08-28T04:26:23.426668Z 01O These lines will be truncated in the PDF manual.
2026-08-28T04:26:23.426934Z 01O * checking Rd cross-references ... OK
2026-08-28T04:26:24.643643Z 01O * checking for missing documentation entries ... OK
2026-08-28T04:26:25.038737Z 01O * checking for code/documentation mismatches ... INFO
2026-08-28T04:26:25.708255Z 01O Exported functions without usage information:
2026-08-28T04:26:25.708257Z 01O   := dcast let melt
2026-08-28T04:26:26.557706Z 01O * checking Rd \usage sections ... OK
2026-08-28T04:26:27.930118Z 01O * checking Rd contents ... OK
2026-08-28T04:26:29.034571Z 01O * checking for unstated dependencies in examples ... OK
2026-08-28T04:26:29.925265Z 01O * checking line endings in shell scripts ... OK
2026-08-28T04:26:29.925965Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-08-28T04:26:29.945270Z 01O * checking line endings in Makefiles ... OK
2026-08-28T04:26:29.945995Z 01O * checking compilation flags in Makevars ... OK
2026-08-28T04:26:30.011861Z 01O * checking for GNU extensions in Makefiles ... OK
2026-08-28T04:26:30.012718Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-08-28T04:26:30.014090Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-08-28T04:26:30.018692Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
2026-08-28T04:26:30.025826Z 01O * checking pragmas in C/C++ headers and code ... OK
2026-08-28T04:26:30.045667Z 01O * checking compilation flags used ... OK
2026-08-28T04:26:30.047520Z 01O * checking compiled code ... OK
2026-08-28T04:26:32.653994Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-08-28T04:26:32.920481Z 01O * checking files in ‘vignettes’ ... OK
2026-08-28T04:26:34.189997Z 01O * checking examples ... OK
2026-08-28T04:26:43.173938Z 01O * checking examples with --run-donttest ... [11s/11s] OK
2026-08-28T04:26:54.751857Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-08-28T04:26:54.842470Z 01O * checking tests ...
2026-08-28T04:26:55.046772Z 01O   Running ‘autoprint.R’
2026-08-28T04:26:55.449830Z 01O   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2026-08-28T04:26:55.456946Z 01O   Running ‘froll.R’ [23m/22m]
2026-08-28T04:49:22.751682Z 01O   Running ‘litedown.R’
2026-08-28T04:49:23.239114Z 01O   Running ‘main.R’ [198s/193s]
2026-08-28T04:52:36.188119Z 01O   Running ‘mergelist.R’
2026-08-28T04:52:39.605217Z 01O   Running ‘nafill.R’
2026-08-28T04:52:40.562228Z 01O   Running ‘optimize.R’
2026-08-28T04:52:43.431341Z 01O   Running ‘other.R’
2026-08-28T04:52:43.757674Z 01O   Running ‘programming.R’
2026-08-28T04:52:44.864656Z 01O   Running ‘S4.R’
2026-08-28T04:52:45.406063Z 01O   Running ‘self.R’
2026-08-28T04:52:45.780113Z 01O   Running ‘types.R’
2026-08-28T04:52:46.187417Z 01O  [26m/26m] OK
2026-08-28T04:52:46.379121Z 01O * checking for unstated dependencies in vignettes ... OK
2026-08-28T04:52:46.793508Z 01O * checking package vignettes ... OK
2026-08-28T04:52:47.471169Z 01O * checking re-building of vignette outputs ... [35s/36s] OK
2026-08-28T04:53:23.374381Z 01O * checking PDF version of manual ... OK
2026-08-28T04:53:32.179313Z 01O * checking HTML version of manual ... NOTE
2026-08-28T04:53:40.864142Z 01O Skipping checking math rendering: package 'V8' unavailable
2026-08-28T04:53:40.864152Z 01O * checking for non-standard things in the check directory ... OK
2026-08-28T04:53:40.864574Z 01O * checking for detritus in the temp directory ... OK
2026-08-28T04:53:40.864990Z 01O * DONE
2026-08-28T04:53:40.865313Z 01E 
2026-08-28T04:53:40.865567Z 01O Status: 3 NOTEs
2026-08-28T04:53:40.865810Z 01E See
2026-08-28T04:53:40.865812Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2026-08-28T04:53:40.865814Z 01E for details.
2026-08-28T04:53:40.866004Z 01E 
2026-08-28T04:53:40.887095Z 01O $ (! grep "warning:" data.table.Rcheck/00install.out)
2026-08-28T04:53:40.888932Z 01O $ Rscript -e 'l=tail(readLines("data.table.Rcheck/00check.log"), 1L); notes<-"Status: 1 NOTE"; if (!identical(l, notes)) stop("Last line of ", shQuote("00check.log"), " is not ", shQuote(notes), " (V8 package) but ", shQuote(l)) else q("no")'
2026-08-28T04:53:41.071314Z 01E Error: Last line of '00check.log' is not 'Status: 1 NOTE' (V8 package) but 'Status: 3 NOTEs'
2026-08-28T04:53:41.071321Z 01E Execution halted
2026-08-28T04:53:41.244659Z 00O section_end:1787892821:step_script

2026-08-28T04:53:41.245155Z 00O+section_start:1787892821:after_script

2026-08-28T04:53:41.245161Z 00O+Running after_script
2026-08-28T04:53:41.575174Z 01O Running after script...
2026-08-28T04:53:41.575204Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-08-28T04:53:41.576347Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-08-28T04:53:41.576403Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-08-28T04:53:41.576573Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-08-28T04:53:41.576580Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-08-28T04:53:41.737813Z 00O section_end:1787892821:after_script

2026-08-28T04:53:41.738895Z 00O+section_start:1787892821:upload_artifacts_on_failure

2026-08-28T04:53:41.738902Z 00O+Uploading artifacts for failed job
2026-08-28T04:53:42.133907Z 01O Uploading artifacts...
2026-08-28T04:53:42.189013Z 01E bus/test-lin-dev-gcc-strict-cran: found 721 matching artifact files and directories 
2026-08-28T04:53:43.579414Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=f5262773fa504920983d172650744131 id=16161768338 status=201 token=72_UiNRGW
2026-08-28T04:53:43.743584Z 00O section_end:1787892823:upload_artifacts_on_failure

2026-08-28T04:53:43.743983Z 00O+section_start:1787892823:cleanup_file_variables

2026-08-28T04:53:43.743989Z 00O+Cleaning up project directory and file based variables
2026-08-28T04:53:44.254346Z 00O section_end:1787892824:cleanup_file_variables

2026-08-28T04:53:44.295692Z 00O ERROR: Job failed: exit code 1