2026-10-12T04:21:04.650529Z 00O Running with gitlab-runner 19.5.0~pre.2272.g28a18501 (28a18501)
2026-10-12T04:21:04.650552Z 00O   on k8s.saas-linux-medium-amd64.runners-manager.gitlab.com/default j8vTLRhES, system ID: r_uo9P3BEBiI71
2026-10-12T04:21:04.650555Z 00O   UUID: 01a01aa6-2f91-7d2c-b24d-7e2d2752ac58
2026-10-12T04:21:04.650564Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true, FF_USE_JOB_ROUTER:true, FF_MACHINE_OPTIONS_EXPAND_ENV:true, FF_DOCKER_MACHINE_JSON_OUTPUT:true
2026-10-12T04:21:04.650596Z 00O Resolving secrets
2026-10-12T04:21:04.650722Z 00O section_start:1791778864:prepare_executor

2026-10-12T04:21:04.650725Z 00O+Preparing the "docker+machine" executor
2026-10-12T04:21:04.724158Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict ...
2026-10-12T04:21:04.724200Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.5.0 )
2026-10-12T04:21:04.724207Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501
2026-10-12T04:21:04.724760Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-10-12T04:21:04.724768Z 00O Pulling docker image registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501 ...
2026-10-12T04:21:06.117743Z 00O Using docker image sha256:08749606eabcea842cbd189a80b2f3d7670b949f70dfc654d45d8b81554bd837 for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:eea1152121f06d47f94871fef69559be0a87c75212f227e34e7617d1a3bbe6c3 ...
2026-10-12T04:21:07.775480Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.5.0 )
2026-10-12T04:21:07.775492Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501
2026-10-12T04:21:07.776350Z 00O Using docker image sha256:08749606eabcea842cbd189a80b2f3d7670b949f70dfc654d45d8b81554bd837 for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:eea1152121f06d47f94871fef69559be0a87c75212f227e34e7617d1a3bbe6c3 ...
2026-10-12T04:21:07.776358Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict
2026-10-12T04:21:07.776929Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-10-12T04:21:07.776937Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict ...
2026-10-12T04:21:25.204833Z 00O Using docker image sha256:f94594408ec7f9c8461b43a8fa30e0a42d6c8634a4e98b2cbe0cf42b6ccbfefb for registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict@sha256:e007773a5d2a3da4ce66969a72eab3eabe97f7b62c548edba0d1077d637b1164 ...
2026-10-12T04:21:25.204901Z 00O section_end:1791778885:prepare_executor

2026-10-12T04:21:25.205019Z 00O+section_start:1791778885:prepare_script

2026-10-12T04:21:25.205039Z 00O+Preparing environment
2026-10-12T04:21:25.205070Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.5.0 )
2026-10-12T04:21:25.205077Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501
2026-10-12T04:21:25.205793Z 00O Using docker image sha256:08749606eabcea842cbd189a80b2f3d7670b949f70dfc654d45d8b81554bd837 for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:eea1152121f06d47f94871fef69559be0a87c75212f227e34e7617d1a3bbe6c3 ...
2026-10-12T04:21:25.205801Z 00O Using effective pull policy of [always] for container sha256:08749606eabcea842cbd189a80b2f3d7670b949f70dfc654d45d8b81554bd837
2026-10-12T04:21:30.357289Z 01O Running on runner-j8vtlrhes-project-3622566-concurrent-0 via runner-j8vtlrhes-s-l-m-amd64-1791778770-4ab84220...
2026-10-12T04:21:30.359922Z 01O Running on CPU: INTEL(R) XEON(R) PLATINUM 8581C CPU @ 2.10GHz (avx, avx2, avx512f)
2026-10-12T04:21:30.505178Z 00O section_end:1791778890:prepare_script

2026-10-12T04:21:30.505559Z 00O+section_start:1791778890:get_sources

2026-10-12T04:21:30.505563Z 00O+Getting source from Git repository
2026-10-12T04:21:30.831095Z 01O Gitaly correlation ID: 3d830159c4c04359b66af6faf624d043
2026-10-12T04:21:30.836437Z 01O Fetching changes...
2026-10-12T04:21:30.839148Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-10-12T04:21:30.841179Z 01O Created fresh repository.
2026-10-12T04:21:36.465960Z 01O Checking out df59dd63 as detached HEAD (ref is master)...
2026-10-12T04:21:36.639186Z 01O 
2026-10-12T04:21:36.639190Z 01O Skipping Git submodules setup
2026-10-12T04:21:36.639191Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-10-12T04:21:36.830728Z 00O section_end:1791778896:get_sources

2026-10-12T04:21:36.831208Z 00O+section_start:1791778896:download_artifacts

2026-10-12T04:21:36.831213Z 00O+Downloading artifacts
2026-10-12T04:21:37.167170Z 01O Downloading artifacts for build (17100991411)...
2026-10-12T04:21:37.343174Z 01E Direct download from storage.googleapis.com         correlation_id=7cbc4fd2a33745bcaf380458642c073c id=17100991411 status=302 token=74_bP59-R
2026-10-12T04:21:37.519097Z 01E Downloading artifacts from coordinator... ok        correlation_id=7cbc4fd2a33745bcaf380458642c073c id=17100991411 status=302 token=74_bP59-R
2026-10-12T04:21:37.527185Z 01O Downloading artifacts for mirror-packages (17100991410)...
2026-10-12T04:21:37.707133Z 01E Direct download from storage.googleapis.com         correlation_id=cd9586e8b0e84f0f981c44b410983263 id=17100991410 status=302 token=74_bP59-R
2026-10-12T04:21:38.169012Z 01E Downloading artifacts from coordinator... ok        correlation_id=cd9586e8b0e84f0f981c44b410983263 id=17100991410 status=302 token=74_bP59-R
2026-10-12T04:21:39.248784Z 00O section_end:1791778899:download_artifacts

2026-10-12T04:21:39.249082Z 00O+section_start:1791778899:step_script

2026-10-12T04:21:39.249089Z 00O+Executing "step_script" stage of the job script
2026-10-12T04:21:39.249104Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict
2026-10-12T04:21:39.250036Z 00O Using docker image sha256:f94594408ec7f9c8461b43a8fa30e0a42d6c8634a4e98b2cbe0cf42b6ccbfefb for registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict@sha256:e007773a5d2a3da4ce66969a72eab3eabe97f7b62c548edba0d1077d637b1164 ...
2026-10-12T04:21:39.566056Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-10-12T04:21:39.572802Z 01O $ mkdir -p ~/.R
2026-10-12T04:21:39.573915Z 01O $ echo 'CFLAGS=-g -O2 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-10-12T04:21:39.573988Z 01O $ echo 'CXXFLAGS=-g -O2 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-10-12T04:21:39.574036Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-10-12T04:21:39.890572Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘lattice’, ‘commonmark’, ‘evaluate’, ‘highr’
2026-10-12T04:21:39.890578Z 01E 
2026-10-12T04:23:47.593369Z 01E Updating HTML index of packages in '.Library'
2026-10-12T04:23:47.593961Z 01E Making 'packages.html' ... done
2026-10-12T04:23:47.606193Z 01O $ R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1)
2026-10-12T04:23:48.776814Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-10-12T04:23:48.776919Z 01O * using R Under development (unstable) (2026-10-10 r90659)
2026-10-12T04:23:48.777182Z 01O * using platform: x86_64-pc-linux-gnu
2026-10-12T04:23:48.777380Z 01O * R was compiled by
2026-10-12T04:23:48.777525Z 01O     gcc (Debian 16.2.0-3) 16.2.0
2026-10-12T04:23:48.777525Z 01O     GNU Fortran (Debian 16.2.0-3) 16.2.0
2026-10-12T04:23:48.777741Z 01O * running under: Debian GNU/Linux forky/sid
2026-10-12T04:23:48.777980Z 01O * using session charset: UTF-8
2026-10-12T04:23:48.778650Z 01O * current time: 2026-10-12 04:23:48 UTC
2026-10-12T04:23:50.974058Z 01O * using option ‘--as-cran’
2026-10-12T04:23:50.974381Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-10-12T04:23:50.978045Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-10-12T04:23:50.978260Z 01O * package encoding: UTF-8
2026-10-12T04:23:50.978517Z 01O * checking CRAN incoming feasibility ... OK
2026-10-12T04:23:52.223240Z 01O * checking package namespace information ... OK
2026-10-12T04:23:52.235197Z 01O * checking package dependencies ... OK
2026-10-12T04:23:53.631724Z 01O * checking if this is a source package ... OK
2026-10-12T04:23:53.634325Z 01O * checking if there is a namespace ... OK
2026-10-12T04:23:53.638415Z 01O * checking for .dll and .exe files ... OK
2026-10-12T04:23:53.638941Z 01O * checking for hidden files and directories ... OK
2026-10-12T04:23:53.640990Z 01O * checking for portable file names ... OK
2026-10-12T04:23:53.645604Z 01O * checking for sufficient/correct file permissions ... OK
2026-10-12T04:23:53.651813Z 01O * checking whether package ‘data.table’ can be installed ... [45s/29s] OK
2026-10-12T04:24:23.065591Z 01O * used C compiler: ‘gcc (Debian 16.2.0-3) 16.2.0’
2026-10-12T04:24:23.065924Z 01O * checking installed package size ... INFO
2026-10-12T04:24:23.069286Z 01O   installed size is  8.8Mb
2026-10-12T04:24:23.070142Z 01O   sub-directories of 1Mb or more:
2026-10-12T04:24:23.070766Z 01O     doc     1.1Mb
2026-10-12T04:24:23.070767Z 01O     libs    2.3Mb
2026-10-12T04:24:23.070767Z 01O     po      1.7Mb
2026-10-12T04:24:23.070768Z 01O     tests   2.2Mb
2026-10-12T04:24:23.170612Z 01O * checking package directory ... OK
2026-10-12T04:24:23.170890Z 01O * checking for future file timestamps ... OK
2026-10-12T04:24:23.171673Z 01O * checking ‘build’ directory ... OK
2026-10-12T04:24:23.172704Z 01O * checking DESCRIPTION meta-information ... OK
2026-10-12T04:24:24.673701Z 01O * checking top-level files ... OK
2026-10-12T04:24:26.032662Z 01O * checking for left-over files ... OK
2026-10-12T04:24:26.035265Z 01O * checking index information ... OK
2026-10-12T04:24:26.236452Z 01O * checking package subdirectories ... OK
2026-10-12T04:24:26.705008Z 01O * checking code files for non-ASCII characters ... OK
2026-10-12T04:24:26.757257Z 01O * checking R files for syntax errors ... OK
2026-10-12T04:24:26.843115Z 01O * checking whether the package can be loaded ... OK
2026-10-12T04:24:27.149574Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-10-12T04:24:27.352640Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-10-12T04:24:27.558073Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-10-12T04:24:27.764960Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-10-12T04:24:28.069334Z 01O * checking loading without being on the library search path ... OK
2026-10-12T04:24:28.676909Z 01O * checking whether startup messages can be suppressed ... OK
2026-10-12T04:24:29.008643Z 01O * checking use of S3 registration ... OK
2026-10-12T04:24:29.040654Z 01O * checking dependencies in R code ... OK
2026-10-12T04:24:30.839675Z 01O * checking S3 generic/method consistency ... OK
2026-10-12T04:24:31.390336Z 01O * checking replacement functions ... OK
2026-10-12T04:24:31.620552Z 01O * checking foreign function calls ... OK
2026-10-12T04:24:33.841616Z 01O * checking R code for possible problems ... [46s/46s] OK
2026-10-12T04:25:20.093148Z 01O * checking Rd files ... OK
2026-10-12T04:25:21.613927Z 01O * checking Rd metadata ... OK
2026-10-12T04:25:21.662667Z 01O * checking Rd line widths ... OK
2026-10-12T04:25:22.195322Z 01O * checking Rd cross-references ... OK
2026-10-12T04:25:23.365008Z 01O * checking for missing documentation entries ... OK
2026-10-12T04:25:23.745838Z 01O * checking for code/documentation mismatches ... OK
2026-10-12T04:25:25.197900Z 01O * checking Rd \usage sections ... OK
2026-10-12T04:25:26.512350Z 01O * checking Rd contents ... OK
2026-10-12T04:25:27.585083Z 01O * checking for unstated dependencies in examples ... OK
2026-10-12T04:25:28.434343Z 01O * checking line endings in shell scripts ... OK
2026-10-12T04:25:28.434828Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-10-12T04:25:28.451612Z 01O * checking line endings in Makefiles ... OK
2026-10-12T04:25:28.452117Z 01O * checking compilation flags in Makevars ... OK
2026-10-12T04:25:28.507983Z 01O * checking for GNU extensions in Makefiles ... OK
2026-10-12T04:25:28.508767Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-10-12T04:25:28.510046Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-10-12T04:25:28.512840Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
2026-10-12T04:25:28.517702Z 01O * checking pragmas in C/C++ headers and code ... OK
2026-10-12T04:25:28.535458Z 01O * checking compilation flags used ... OK
2026-10-12T04:25:28.537289Z 01O * checking compiled code ... OK
2026-10-12T04:25:30.732826Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-10-12T04:25:30.974308Z 01O * checking files in ‘vignettes’ ... OK
2026-10-12T04:25:32.206258Z 01O * checking examples ... OK
2026-10-12T04:25:41.018833Z 01O * checking examples with --run-donttest ... [11s/11s] OK
2026-10-12T04:25:53.068267Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-10-12T04:25:53.147975Z 01O * checking tests ...
2026-10-12T04:25:53.333384Z 01O   Running ‘autoprint.R’
2026-10-12T04:25:53.709546Z 01O   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2026-10-12T04:25:53.715782Z 01O   Running ‘froll.R’ [22m/22m]
2026-10-12T04:47:37.158839Z 01O   Running ‘litedown.R’
2026-10-12T04:47:37.591215Z 01O   Running ‘main.R’ [199s/195s]
2026-10-12T04:50:52.629701Z 01O   Running ‘mergelist.R’
2026-10-12T04:50:55.734532Z 01O   Running ‘nafill.R’
2026-10-12T04:50:56.645551Z 01O   Running ‘optimize.R’
2026-10-12T04:50:59.270256Z 01O   Running ‘other.R’
2026-10-12T04:50:59.565965Z 01O   Running ‘programming.R’
2026-10-12T04:51:00.594647Z 01O   Running ‘S4.R’
2026-10-12T04:51:01.117797Z 01O   Running ‘self.R’
2026-10-12T04:51:01.472462Z 01O   Running ‘types.R’
2026-10-12T04:51:01.841665Z 01O  [26m/25m] OK
2026-10-12T04:51:02.168645Z 01O * checking for unstated dependencies in vignettes ... OK
2026-10-12T04:51:02.549699Z 01O * checking package vignettes ... OK
2026-10-12T04:51:04.051520Z 01O * checking re-building of vignette outputs ... [35s/35s] OK
2026-10-12T04:51:39.442847Z 01O * checking PDF version of manual ... OK
2026-10-12T04:51:48.105533Z 01O * checking HTML version of manual ... NOTE
2026-10-12T04:51:57.782142Z 01O Skipping checking math rendering: package 'V8' unavailable
2026-10-12T04:51:57.782148Z 01O * checking for non-standard things in the check directory ... OK
2026-10-12T04:51:57.782650Z 01O * checking for detritus in the temp directory ... OK
2026-10-12T04:51:57.783377Z 01O * DONE
2026-10-12T04:51:57.783880Z 01E 
2026-10-12T04:51:57.783928Z 01O Status: 1 NOTE
2026-10-12T04:51:57.784177Z 01E See
2026-10-12T04:51:57.784178Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2026-10-12T04:51:57.784180Z 01E for details.
2026-10-12T04:51:57.784308Z 01E 
2026-10-12T04:51:57.796684Z 01O $ (! grep "warning:" data.table.Rcheck/00install.out)
2026-10-12T04:51:57.798235Z 01O $ Rscript -e 'l=tail(readLines("data.table.Rcheck/00check.log"), 1L); notes<-"Status: 1 NOTE"; if (!identical(l, notes)) stop("Last line of ", shQuote("00check.log"), " is not ", shQuote(notes), " (V8 package) but ", shQuote(l)) else q("no")'
2026-10-12T04:51:58.132325Z 00O section_end:1791780718:step_script

2026-10-12T04:51:58.132566Z 00O+section_start:1791780718:after_script

2026-10-12T04:51:58.132570Z 00O+Running after_script
2026-10-12T04:51:58.419755Z 01O Running after script...
2026-10-12T04:51:58.419779Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-10-12T04:51:58.420722Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-10-12T04:51:58.420724Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-10-12T04:51:58.420731Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-10-12T04:51:58.420799Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-10-12T04:51:58.571620Z 00O section_end:1791780718:after_script

2026-10-12T04:51:58.572100Z 00O+section_start:1791780718:upload_artifacts_on_success

2026-10-12T04:51:58.572105Z 00O+Uploading artifacts for successful job
2026-10-12T04:51:58.911928Z 01O Uploading artifacts...
2026-10-12T04:51:58.962160Z 01E bus/test-lin-dev-gcc-strict-cran: found 721 matching artifact files and directories 
2026-10-12T04:52:00.553658Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=c52d12f1b3064e7ca1786892b8521ab0 id=17100991415 status=201 token=74_bP59-R
2026-10-12T04:52:00.698736Z 00O section_end:1791780720:upload_artifacts_on_success

2026-10-12T04:52:00.699074Z 00O+section_start:1791780720:cleanup_file_variables

2026-10-12T04:52:00.699079Z 00O+Cleaning up project directory and file based variables
2026-10-12T04:52:01.151283Z 00O section_end:1791780721:cleanup_file_variables

2026-10-12T04:52:01.181005Z 00O Job succeeded