2026-04-13T04:22:05.683258Z 00O Running with gitlab-runner 18.10.0~pre.705.ge11dde90 (e11dde90)
2026-04-13T04:22:05.683267Z 00O   on blue-5.saas-linux-medium-amd64.runners-manager.gitlab.com/default nEW2M-oDE, system ID: s_fe9b8d77dc4b
2026-04-13T04:22:05.683272Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true
2026-04-13T04:22:05.683289Z 00O Resolving secrets
2026-04-13T04:22:05.683401Z 00O section_start:1776054125:prepare_executor
2026-04-13T04:22:05.683402Z 00O+Preparing the "docker+machine" executor
2026-04-13T04:22:05.814547Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-04-13T04:22:09.798443Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-04-13T04:22:09.798949Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-04-13T04:22:09.798956Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-04-13T04:22:21.125365Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-04-13T04:22:21.125431Z 00O section_end:1776054141:prepare_executor
2026-04-13T04:22:21.125433Z 00O+section_start:1776054141:prepare_script
2026-04-13T04:22:21.125513Z 00O+Preparing environment
2026-04-13T04:22:21.126649Z 00O Using effective pull policy of [always] for container sha256:044ddb069e60190401224d4ac6434d80282d9dd908437f2480e4d02d08c2cd15
2026-04-13T04:22:32.198203Z 01O Running on runner-new2m-ode-project-3622566-concurrent-0 via runner-new2m-ode-s-l-m-amd64-1776053858-4d51f304...
2026-04-13T04:22:32.369149Z 00O section_end:1776054152:prepare_script
2026-04-13T04:22:32.369155Z 00O+section_start:1776054152:get_sources
2026-04-13T04:22:32.369664Z 00O+Getting source from Git repository
2026-04-13T04:22:32.722145Z 01O Gitaly correlation ID: 41cab010484b466b96192e346fc7be3e
2026-04-13T04:22:32.728528Z 01O Fetching changes...
2026-04-13T04:22:32.731816Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-04-13T04:22:32.734173Z 01O Created fresh repository.
2026-04-13T04:22:38.248865Z 01O Checking out 8364344c as detached HEAD (ref is master)...
2026-04-13T04:22:38.431191Z 01O 
2026-04-13T04:22:38.431195Z 01O Skipping Git submodules setup
2026-04-13T04:22:38.431196Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-04-13T04:22:38.656794Z 00O section_end:1776054158:get_sources
2026-04-13T04:22:38.656798Z 00O+section_start:1776054158:download_artifacts
2026-04-13T04:22:38.657568Z 00O+Downloading artifacts
2026-04-13T04:22:39.038860Z 01O Downloading artifacts for build (13888029259)...
2026-04-13T04:22:39.319426Z 01E Downloading artifacts from coordinator... ok        correlation_id=510e651c5fa2445cbfcbf5a73c4f9db7 host=storage.googleapis.com id=13888029259 responseStatus=200 OK token=6e_rNhonh
2026-04-13T04:22:39.336835Z 01O Downloading artifacts for mirror-packages (13888029255)...
2026-04-13T04:22:40.403978Z 01E Downloading artifacts from coordinator... ok        correlation_id=d9b77fa9f5864799b3868f0289082680 host=storage.googleapis.com id=13888029255 responseStatus=200 OK token=6e_rNhonh
2026-04-13T04:22:41.426851Z 00O section_end:1776054161:download_artifacts
2026-04-13T04:22:41.426857Z 00O+section_start:1776054161:step_script
2026-04-13T04:22:41.427299Z 00O+Executing "step_script" stage of the job script
2026-04-13T04:22:41.427319Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-04-13T04:22:41.428512Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-04-13T04:22:41.800237Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-04-13T04:22:41.810050Z 01O $ mkdir -p ~/.R
2026-04-13T04:22:41.811699Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-04-13T04:22:42.012568Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’, ‘evaluate’, ‘highr’
2026-04-13T04:22:42.012576Z 01E 
2026-04-13T04:23:46.444139Z 01O $ echo 'CFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-04-13T04:23:46.444199Z 01O $ echo 'CXXFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-04-13T04:23:46.444201Z 01O $ res1=0; R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command
2026-04-13T04:23:46.619193Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-04-13T04:23:46.619356Z 01O * using R version 4.5.0 (2025-04-11)
2026-04-13T04:23:46.619661Z 01O * using platform: x86_64-pc-linux-gnu
2026-04-13T04:23:46.619850Z 01O * R was compiled by
2026-04-13T04:23:46.619998Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-04-13T04:23:46.619999Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-04-13T04:23:46.620245Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-04-13T04:23:46.620516Z 01O * using session charset: UTF-8
2026-04-13T04:23:47.356689Z 01O * using option ‘--as-cran’
2026-04-13T04:23:47.356989Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-04-13T04:23:47.359465Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-04-13T04:23:47.359621Z 01O * package encoding: UTF-8
2026-04-13T04:23:47.359881Z 01O * checking CRAN incoming feasibility ... OK
2026-04-13T04:23:47.897913Z 01O * checking package namespace information ... OK
2026-04-13T04:23:47.905538Z 01O * checking package dependencies ... OK
2026-04-13T04:23:48.873169Z 01O * checking if this is a source package ... OK
2026-04-13T04:23:48.876095Z 01O * checking if there is a namespace ... OK
2026-04-13T04:23:48.880355Z 01O * checking for .dll and .exe files ... OK
2026-04-13T04:23:48.880827Z 01O * checking for hidden files and directories ... OK
2026-04-13T04:23:48.883689Z 01O * checking for portable file names ... OK
2026-04-13T04:23:48.887839Z 01O * checking for sufficient/correct file permissions ... OK
2026-04-13T04:23:48.891769Z 01O * checking whether package ‘data.table’ can be installed ... [24s/24s] OK
2026-04-13T04:24:12.949994Z 01O * used C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’
2026-04-13T04:24:12.950337Z 01O * checking installed package size ... OK
2026-04-13T04:24:12.966726Z 01O * checking package directory ... OK
2026-04-13T04:24:12.967147Z 01O * checking for future file timestamps ... OK
2026-04-13T04:24:12.967724Z 01O * checking ‘build’ directory ... OK
2026-04-13T04:24:12.969058Z 01O * checking DESCRIPTION meta-information ... OK
2026-04-13T04:24:13.780810Z 01O * checking top-level files ... OK
2026-04-13T04:24:15.260509Z 01O * checking for left-over files ... OK
2026-04-13T04:24:15.263551Z 01O * checking index information ... OK
2026-04-13T04:24:15.430150Z 01O * checking package subdirectories ... OK
2026-04-13T04:24:15.801206Z 01O * checking code files for non-ASCII characters ... OK
2026-04-13T04:24:15.848790Z 01O * checking R files for syntax errors ... OK
2026-04-13T04:24:15.929582Z 01O * checking whether the package can be loaded ... OK
2026-04-13T04:24:16.128182Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-04-13T04:24:16.280861Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-04-13T04:24:16.434818Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-04-13T04:24:16.592252Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-04-13T04:24:16.793224Z 01O * checking loading without being on the library search path ... OK
2026-04-13T04:24:17.191854Z 01O * checking whether startup messages can be suppressed ... OK
2026-04-13T04:24:17.387961Z 01O * checking use of S3 registration ... OK
2026-04-13T04:24:18.360105Z 01O * checking dependencies in R code ... OK
2026-04-13T04:24:19.210952Z 01O * checking S3 generic/method consistency ... OK
2026-04-13T04:24:19.553693Z 01O * checking replacement functions ... OK
2026-04-13T04:24:19.749083Z 01O * checking foreign function calls ... OK
2026-04-13T04:24:20.514593Z 01O * checking R code for possible problems ... [16s/16s] OK
2026-04-13T04:24:36.664661Z 01O * checking Rd files ... OK
2026-04-13T04:24:37.250384Z 01O * checking Rd metadata ... OK
2026-04-13T04:24:37.291950Z 01O * checking Rd line widths ... OK
2026-04-13T04:24:37.584307Z 01O * checking Rd cross-references ... OK
2026-04-13T04:24:38.156176Z 01O * checking for missing documentation entries ... OK
2026-04-13T04:24:38.378406Z 01O * checking for code/documentation mismatches ... OK
2026-04-13T04:24:39.352518Z 01O * checking Rd \usage sections ... OK
2026-04-13T04:24:40.244305Z 01O * checking Rd contents ... OK
2026-04-13T04:24:40.692241Z 01O * checking for unstated dependencies in examples ... OK
2026-04-13T04:24:41.163983Z 01O * checking line endings in shell scripts ... OK
2026-04-13T04:24:41.164466Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-04-13T04:24:41.182532Z 01O * checking line endings in Makefiles ... OK
2026-04-13T04:24:41.183071Z 01O * checking compilation flags in Makevars ... OK
2026-04-13T04:24:41.237665Z 01O * checking for GNU extensions in Makefiles ... OK
2026-04-13T04:24:41.238558Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-04-13T04:24:41.239782Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-04-13T04:24:41.244016Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
2026-04-13T04:24:41.250603Z 01O * checking pragmas in C/C++ headers and code ... OK
2026-04-13T04:24:41.272345Z 01O * checking compilation flags used ... OK
2026-04-13T04:24:41.273987Z 01O * checking compiled code ... NOTE
2026-04-13T04:24:41.346378Z 01O File ‘data.table/libs/data_table.so’:
2026-04-13T04:24:41.346382Z 01O   Found non-API calls to R: ‘IS_GROWABLE’, ‘LEVELS’, ‘R_GetConnection’,
2026-04-13T04:24:41.346383Z 01O     ‘R_ReadConnection’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’,
2026-04-13T04:24:41.346384Z 01O     ‘SET_TRUELENGTH’, ‘TRUELENGTH’, ‘XTRUELENGTH’
2026-04-13T04:24:41.346959Z 01O 
2026-04-13T04:24:41.346981Z 01O Compiled code should not call non-API entry points in R.
2026-04-13T04:24:41.346981Z 01O 
2026-04-13T04:24:41.346982Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
2026-04-13T04:24:41.346982Z 01O and section ‘Moving into C API compliance’ for issues with the use of
2026-04-13T04:24:41.346983Z 01O non-API entry points.
2026-04-13T04:24:41.348036Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-04-13T04:24:41.556875Z 01O * checking files in ‘vignettes’ ... OK
2026-04-13T04:24:41.748724Z 01O * checking examples ... OK
2026-04-13T04:24:48.520421Z 01O * checking examples with --run-donttest ... OK
2026-04-13T04:24:57.625303Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-04-13T04:24:57.689671Z 01O * checking tests ...
2026-04-13T04:24:57.826494Z 01E   Running ‘autoprint.R’
2026-04-13T04:24:58.065817Z 01E   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2026-04-13T04:24:58.073260Z 01E   Running ‘froll.R’ [431s/411s]
2026-04-13T04:31:48.921668Z 01E   Running ‘litedown.R’
2026-04-13T04:31:49.212983Z 01E   Running ‘main.R’ [45s/41s]
2026-04-13T04:32:30.399049Z 01E   Running ‘mergelist.R’
2026-04-13T04:32:31.926774Z 01E   Running ‘nafill.R’
2026-04-13T04:32:32.411768Z 01E   Running ‘optimize.R’
2026-04-13T04:32:33.712560Z 01E   Running ‘other.R’
2026-04-13T04:32:33.924635Z 01E   Running ‘programming.R’
2026-04-13T04:32:34.511078Z 01E   Running ‘S4.R’
2026-04-13T04:32:34.816509Z 01E   Running ‘types.R’
2026-04-13T04:32:35.058009Z 01O  [482s/457s] OK
2026-04-13T04:32:35.170677Z 01O * checking for unstated dependencies in vignettes ... OK
2026-04-13T04:32:35.444623Z 01O * checking package vignettes ... OK
2026-04-13T04:32:36.204038Z 01O * checking re-building of vignette outputs ... [27s/28s] OK
2026-04-13T04:33:04.611812Z 01O * checking PDF version of manual ... OK
2026-04-13T04:33:10.518131Z 01O * checking HTML version of manual ... OK
2026-04-13T04:33:13.577352Z 01O * checking for non-standard things in the check directory ... OK
2026-04-13T04:33:13.577869Z 01O * checking for detritus in the temp directory ... OK
2026-04-13T04:33:13.578489Z 01O * DONE
2026-04-13T04:33:13.578851Z 01E 
2026-04-13T04:33:13.579010Z 01O Status: 1 NOTE
2026-04-13T04:33:13.579173Z 01E See
2026-04-13T04:33:13.579173Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2026-04-13T04:33:13.579174Z 01E for details.
2026-04-13T04:33:13.579279Z 01E 
2026-04-13T04:33:13.923147Z 00O section_end:1776054793:step_script
2026-04-13T04:33:13.923151Z 00O+section_start:1776054793:after_script
2026-04-13T04:33:13.923524Z 00O+Running after_script
2026-04-13T04:33:14.270538Z 01O Running after script...
2026-04-13T04:33:14.270558Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-04-13T04:33:14.271832Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-04-13T04:33:14.271836Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-04-13T04:33:14.271940Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-04-13T04:33:14.272048Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-04-13T04:33:14.434194Z 00O section_end:1776054794:after_script
2026-04-13T04:33:14.434198Z 00O+section_start:1776054794:upload_artifacts_on_success
2026-04-13T04:33:14.434891Z 00O+Uploading artifacts for successful job
2026-04-13T04:33:14.834488Z 01O Uploading artifacts...
2026-04-13T04:33:14.914989Z 01E bus/test-lin-rel-cran: found 713 matching artifact files and directories 
2026-04-13T04:33:17.190412Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=070d6aafe3664588b96e1609bbc07bd5 id=13888029269 responseStatus=201 Created token=6e_rNhonh
2026-04-13T04:33:17.366283Z 00O section_end:1776054797:upload_artifacts_on_success
2026-04-13T04:33:17.366288Z 00O+section_start:1776054797:cleanup_file_variables
2026-04-13T04:33:17.366380Z 00O+Cleaning up project directory and file based variables
2026-04-13T04:33:17.875457Z 00O section_end:1776054797:cleanup_file_variables
2026-04-13T04:33:17.875462Z 00O+
2026-04-13T04:33:17.913360Z 00O Job succeeded