2026-07-13T04:20:57.836921Z 00O Running with gitlab-runner 19.0.0~pre.1138.ga0a1e0e8 (a0a1e0e8)
2026-07-13T04:20:57.836936Z 00O   on blue-2.saas-linux-medium-amd64.runners-manager.gitlab.com/default ZQ74L_riD, system ID: s_805fb2e5035f
2026-07-13T04:20:57.836941Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true
2026-07-13T04:20:57.836958Z 00O Resolving secrets
2026-07-13T04:20:57.837091Z 00O section_start:1783916457:prepare_executor
2026-07-13T04:20:57.837092Z 00O+Preparing the "docker+machine" executor
2026-07-13T04:20:57.957429Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-07-13T04:21:00.743898Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-07-13T04:21:00.744346Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-07-13T04:21:00.744354Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-07-13T04:21:07.211154Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-07-13T04:21:07.211239Z 00O section_end:1783916467:prepare_executor
2026-07-13T04:21:07.211240Z 00O+section_start:1783916467:prepare_script
2026-07-13T04:21:07.211331Z 00O+Preparing environment
2026-07-13T04:21:07.211950Z 00O Using effective pull policy of [always] for container sha256:0c565e08fee0ef47074743c3059356bc47b8c42dad36dda17f8f43a0c0413faf
2026-07-13T04:21:16.269172Z 01O Running on runner-zq74lrid-project-3622566-concurrent-0 via runner-zq74lrid-s-l-m-amd64-1783916421-37494ea1...
2026-07-13T04:21:16.391457Z 00O section_end:1783916476:prepare_script
2026-07-13T04:21:16.391461Z 00O+section_start:1783916476:get_sources
2026-07-13T04:21:16.391976Z 00O+Getting source from Git repository
2026-07-13T04:21:16.628361Z 01O Gitaly correlation ID: b080eae1783c49aaac21de33e2bf76e6
2026-07-13T04:21:16.631402Z 01O Fetching changes...
2026-07-13T04:21:16.633053Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-07-13T04:21:16.634215Z 01O Created fresh repository.
2026-07-13T04:21:20.030354Z 01O Checking out f55ed355 as detached HEAD (ref is master)...
2026-07-13T04:21:20.132015Z 01O 
2026-07-13T04:21:20.132018Z 01O Skipping Git submodules setup
2026-07-13T04:21:20.132019Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-07-13T04:21:20.296257Z 00O section_end:1783916480:get_sources
2026-07-13T04:21:20.296264Z 00O+section_start:1783916480:download_artifacts
2026-07-13T04:21:20.297002Z 00O+Downloading artifacts
2026-07-13T04:21:20.523548Z 01O Downloading artifacts for build (15308171288)...
2026-07-13T04:21:20.688757Z 01E Direct download from storage.googleapis.com         correlation_id=321d53f7df4a4e688376146091bc51cd id=15308171288 status=302 token=71_R8TgEG
2026-07-13T04:21:20.899347Z 01E Downloading artifacts from coordinator... ok        correlation_id=321d53f7df4a4e688376146091bc51cd id=15308171288 status=302 token=71_R8TgEG
2026-07-13T04:21:20.907445Z 01O Downloading artifacts for mirror-packages (15308171287)...
2026-07-13T04:21:21.151707Z 01E Direct download from storage.googleapis.com         correlation_id=c2e321909e4d415fa06cbbdf68274c0e id=15308171287 status=302 token=71_R8TgEG
2026-07-13T04:21:21.725521Z 01E Downloading artifacts from coordinator... ok        correlation_id=c2e321909e4d415fa06cbbdf68274c0e id=15308171287 status=302 token=71_R8TgEG
2026-07-13T04:21:22.865137Z 00O section_end:1783916482:download_artifacts
2026-07-13T04:21:22.865142Z 00O+section_start:1783916482:step_script
2026-07-13T04:21:22.865547Z 00O+Executing "step_script" stage of the job script
2026-07-13T04:21:22.865562Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-07-13T04:21:22.866267Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-07-13T04:21:23.091101Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-07-13T04:21:23.095028Z 01O $ mkdir -p ~/.R
2026-07-13T04:21:23.095774Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-07-13T04:21:23.219562Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’, ‘evaluate’, ‘highr’
2026-07-13T04:21:23.219565Z 01E 
2026-07-13T04:22:02.580094Z 01O $ echo 'CFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-07-13T04:22:02.580098Z 01O $ echo 'CXXFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-07-13T04:22:02.580099Z 01O $ res1=0; R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command
2026-07-13T04:22:02.682095Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-07-13T04:22:02.682104Z 01O * using R version 4.5.0 (2025-04-11)
2026-07-13T04:22:02.682181Z 01O * using platform: x86_64-pc-linux-gnu
2026-07-13T04:22:02.682264Z 01O * R was compiled by
2026-07-13T04:22:02.682324Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-07-13T04:22:02.682325Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-07-13T04:22:02.682437Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-07-13T04:22:02.682516Z 01O * using session charset: UTF-8
2026-07-13T04:22:03.103843Z 01O * using option ‘--as-cran’
2026-07-13T04:22:03.103982Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-07-13T04:22:03.105584Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-07-13T04:22:03.105674Z 01O * package encoding: UTF-8
2026-07-13T04:22:03.105782Z 01O * checking CRAN incoming feasibility ... OK
2026-07-13T04:22:03.452218Z 01O * checking package namespace information ... OK
2026-07-13T04:22:03.459082Z 01O * checking package dependencies ... OK
2026-07-13T04:22:04.236917Z 01O * checking if this is a source package ... OK
2026-07-13T04:22:04.238546Z 01O * checking if there is a namespace ... OK
2026-07-13T04:22:04.240822Z 01O * checking for .dll and .exe files ... OK
2026-07-13T04:22:04.240975Z 01O * checking for hidden files and directories ... OK
2026-07-13T04:22:04.241975Z 01O * checking for portable file names ... OK
2026-07-13T04:22:04.244296Z 01O * checking for sufficient/correct file permissions ... OK
2026-07-13T04:22:04.246731Z 01O * checking whether package ‘data.table’ can be installed ... [15s/15s] OK
2026-07-13T04:22:19.721275Z 01O * used C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’
2026-07-13T04:22:19.721476Z 01O * checking installed package size ... OK
2026-07-13T04:22:19.730389Z 01O * checking package directory ... OK
2026-07-13T04:22:19.730561Z 01O * checking for future file timestamps ... OK
2026-07-13T04:22:19.730903Z 01O * checking ‘build’ directory ... OK
2026-07-13T04:22:19.731380Z 01O * checking DESCRIPTION meta-information ... OK
2026-07-13T04:22:20.306186Z 01O * checking top-level files ... OK
2026-07-13T04:22:21.305471Z 01O * checking for left-over files ... OK
2026-07-13T04:22:21.307225Z 01O * checking index information ... OK
2026-07-13T04:22:21.412194Z 01O * checking package subdirectories ... OK
2026-07-13T04:22:21.653807Z 01O * checking code files for non-ASCII characters ... OK
2026-07-13T04:22:21.684795Z 01O * checking R files for syntax errors ... OK
2026-07-13T04:22:21.736431Z 01O * checking whether the package can be loaded ... OK
2026-07-13T04:22:21.863681Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-07-13T04:22:21.965993Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-07-13T04:22:22.070454Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-07-13T04:22:22.172777Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-07-13T04:22:22.302310Z 01O * checking loading without being on the library search path ... OK
2026-07-13T04:22:22.561301Z 01O * checking whether startup messages can be suppressed ... OK
2026-07-13T04:22:22.688256Z 01O * checking use of S3 registration ... OK
2026-07-13T04:22:23.444513Z 01O * checking dependencies in R code ... OK
2026-07-13T04:22:24.012602Z 01O * checking S3 generic/method consistency ... OK
2026-07-13T04:22:24.245599Z 01O * checking replacement functions ... OK
2026-07-13T04:22:24.387084Z 01O * checking foreign function calls ... OK
2026-07-13T04:22:24.890144Z 01O * checking R code for possible problems ... OK
2026-07-13T04:22:34.444820Z 01O * checking Rd files ... OK
2026-07-13T04:22:34.794802Z 01O * checking Rd metadata ... OK
2026-07-13T04:22:34.820503Z 01O * checking Rd line widths ... OK
2026-07-13T04:22:35.000057Z 01O * checking Rd cross-references ... OK
2026-07-13T04:22:35.332092Z 01O * checking for missing documentation entries ... OK
2026-07-13T04:22:35.474087Z 01O * checking for code/documentation mismatches ... OK
2026-07-13T04:22:36.128598Z 01O * checking Rd \usage sections ... OK
2026-07-13T04:22:36.733025Z 01O * checking Rd contents ... OK
2026-07-13T04:22:37.016838Z 01O * checking for unstated dependencies in examples ... OK
2026-07-13T04:22:37.310863Z 01O * checking line endings in shell scripts ... OK
2026-07-13T04:22:37.311178Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-07-13T04:22:37.321216Z 01O * checking line endings in Makefiles ... OK
2026-07-13T04:22:37.321457Z 01O * checking compilation flags in Makevars ... OK
2026-07-13T04:22:37.351787Z 01O * checking for GNU extensions in Makefiles ... OK
2026-07-13T04:22:37.352246Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-07-13T04:22:37.352925Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-07-13T04:22:37.354659Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
2026-07-13T04:22:37.357614Z 01O * checking pragmas in C/C++ headers and code ... OK
2026-07-13T04:22:37.370424Z 01O * checking compilation flags used ... OK
2026-07-13T04:22:37.371416Z 01O * checking compiled code ... NOTE
2026-07-13T04:22:37.415483Z 01O File ‘data.table/libs/data.table.so’:
2026-07-13T04:22:37.415484Z 01O   Found non-API calls to R: ‘IS_GROWABLE’, ‘LEVELS’, ‘R_GetConnection’,
2026-07-13T04:22:37.415485Z 01O     ‘R_ReadConnection’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’,
2026-07-13T04:22:37.415486Z 01O     ‘SET_TRUELENGTH’, ‘TRUELENGTH’, ‘XTRUELENGTH’
2026-07-13T04:22:37.415918Z 01O 
2026-07-13T04:22:37.415918Z 01O Compiled code should not call non-API entry points in R.
2026-07-13T04:22:37.415919Z 01O 
2026-07-13T04:22:37.415919Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
2026-07-13T04:22:37.415920Z 01O and section ‘Moving into C API compliance’ for issues with the use of
2026-07-13T04:22:37.415920Z 01O non-API entry points.
2026-07-13T04:22:37.416639Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-07-13T04:22:37.540512Z 01O * checking files in ‘vignettes’ ... OK
2026-07-13T04:22:37.668761Z 01O * checking examples ... OK
2026-07-13T04:22:43.877487Z 01O * checking examples with --run-donttest ... OK
2026-07-13T04:22:51.376608Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-07-13T04:22:51.412508Z 01O * checking tests ...
2026-07-13T04:22:51.497296Z 01E   Running ‘autoprint.R’
2026-07-13T04:22:51.635941Z 01E   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2026-07-13T04:22:51.639465Z 01E   Running ‘froll.R’ [258s/250s]
2026-07-13T04:27:01.588845Z 01E   Running ‘litedown.R’
2026-07-13T04:27:01.764922Z 01E   Running ‘main.R’ [30s/27s]
2026-07-13T04:27:28.855011Z 01E   Running ‘mergelist.R’
2026-07-13T04:27:29.692003Z 01E   Running ‘nafill.R’
2026-07-13T04:27:29.952898Z 01E   Running ‘optimize.R’
2026-07-13T04:27:30.685572Z 01E   Running ‘other.R’
2026-07-13T04:27:30.804576Z 01E   Running ‘programming.R’
2026-07-13T04:27:31.150983Z 01E   Running ‘S4.R’
2026-07-13T04:27:31.327778Z 01E   Running ‘types.R’
2026-07-13T04:27:31.466511Z 01O  [291s/280s] OK
2026-07-13T04:27:31.523320Z 01O * checking for unstated dependencies in vignettes ... OK
2026-07-13T04:27:31.678757Z 01O * checking package vignettes ... OK
2026-07-13T04:27:32.088981Z 01O * checking re-building of vignette outputs ... [17s/18s] OK
2026-07-13T04:27:49.685185Z 01O * checking PDF version of manual ... OK
2026-07-13T04:27:52.970713Z 01O * checking HTML version of manual ... OK
2026-07-13T04:27:54.784516Z 01O * checking for non-standard things in the check directory ... OK
2026-07-13T04:27:54.784748Z 01O * checking for detritus in the temp directory ... OK
2026-07-13T04:27:54.785103Z 01O * DONE
2026-07-13T04:27:54.785355Z 01E 
2026-07-13T04:27:54.785405Z 01O Status: 1 NOTE
2026-07-13T04:27:54.785502Z 01E See
2026-07-13T04:27:54.785503Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2026-07-13T04:27:54.785504Z 01E for details.
2026-07-13T04:27:54.785527Z 01E 
2026-07-13T04:27:55.003741Z 00O section_end:1783916875:step_script
2026-07-13T04:27:55.003746Z 00O+section_start:1783916875:after_script
2026-07-13T04:27:55.004149Z 00O+Running after_script
2026-07-13T04:27:55.215350Z 01O Running after script...
2026-07-13T04:27:55.215376Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-07-13T04:27:55.215907Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-07-13T04:27:55.215908Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-07-13T04:27:55.215917Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-07-13T04:27:55.215927Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-07-13T04:27:55.339431Z 00O section_end:1783916875:after_script
2026-07-13T04:27:55.339435Z 00O+section_start:1783916875:upload_artifacts_on_success
2026-07-13T04:27:55.340177Z 00O+Uploading artifacts for successful job
2026-07-13T04:27:55.572636Z 01O Uploading artifacts...
2026-07-13T04:27:55.601162Z 01E bus/test-lin-rel-cran: found 715 matching artifact files and directories 
2026-07-13T04:27:57.364915Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=9276c4eebc8e4e85a59ce66ccee59674 id=15308171291 status=201 token=71_R8TgEG
2026-07-13T04:27:57.483157Z 00O section_end:1783916877:upload_artifacts_on_success
2026-07-13T04:27:57.483161Z 00O+section_start:1783916877:cleanup_file_variables
2026-07-13T04:27:57.483255Z 00O+Cleaning up project directory and file based variables
2026-07-13T04:27:57.809930Z 00O section_end:1783916877:cleanup_file_variables
2026-07-13T04:27:57.809935Z 00O+
2026-07-13T04:27:57.827979Z 00O Job succeeded