2026-05-29T04:21:19.225657Z 00O Running with gitlab-runner 19.0.0~pre.1138.ga0a1e0e8 (a0a1e0e8)
2026-05-29T04:21:19.225668Z 00O   on blue-3.saas-linux-medium-amd64.runners-manager.gitlab.com/default U4xQPDyhm, system ID: s_b59597d5b921
2026-05-29T04:21:19.225673Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true
2026-05-29T04:21:19.225692Z 00O Resolving secrets
2026-05-29T04:21:19.225822Z 00O section_start:1780028479:prepare_executor
2026-05-29T04:21:19.225823Z 00O+Preparing the "docker+machine" executor
2026-05-29T04:21:19.362238Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-05-29T04:21:23.319752Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-05-29T04:21:23.320327Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-05-29T04:21:23.320336Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-05-29T04:21:34.928819Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-05-29T04:21:34.928899Z 00O section_end:1780028494:prepare_executor
2026-05-29T04:21:34.928900Z 00O+section_start:1780028494:prepare_script
2026-05-29T04:21:34.928976Z 00O+Preparing environment
2026-05-29T04:21:34.929847Z 00O Using effective pull policy of [always] for container sha256:a0b51ba76255d2372c6b00d9ca385defcd6fbbbfd32c7732f35b90eea5742cc8
2026-05-29T04:21:43.300440Z 01O Running on runner-u4xqpdyhm-project-3622566-concurrent-0 via runner-u4xqpdyhm-s-l-m-amd64-1780028413-9bb90fb1...
2026-05-29T04:21:43.484738Z 00O section_end:1780028503:prepare_script
2026-05-29T04:21:43.484742Z 00O+section_start:1780028503:get_sources
2026-05-29T04:21:43.485265Z 00O+Getting source from Git repository
2026-05-29T04:21:43.887851Z 01O Gitaly correlation ID: 24b741aaf9cb4b65a664bce5aa221eb4
2026-05-29T04:21:43.896018Z 01O Fetching changes...
2026-05-29T04:21:43.899423Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-05-29T04:21:43.902318Z 01O Created fresh repository.
2026-05-29T04:21:49.671976Z 01O Checking out 1b998b10 as detached HEAD (ref is master)...
2026-05-29T04:21:49.874127Z 01O 
2026-05-29T04:21:49.874131Z 01O Skipping Git submodules setup
2026-05-29T04:21:49.874132Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-05-29T04:21:50.090926Z 00O section_end:1780028510:get_sources
2026-05-29T04:21:50.090931Z 00O+section_start:1780028510:download_artifacts
2026-05-29T04:21:50.091657Z 00O+Downloading artifacts
2026-05-29T04:21:50.508786Z 01O Downloading artifacts for mirror-packages (14595616712)...
2026-05-29T04:21:50.712439Z 01E Direct download from storage.googleapis.com         correlation_id=cb8ea7f9f38041ea9122b4926d6b84bd id=14595616712 status=302 token=6f_ubjpjX
2026-05-29T04:21:51.244438Z 01E Downloading artifacts from coordinator... ok        correlation_id=cb8ea7f9f38041ea9122b4926d6b84bd id=14595616712 status=302 token=6f_ubjpjX
2026-05-29T04:21:51.888959Z 01O Downloading artifacts for build (14595616713)...
2026-05-29T04:21:52.075156Z 01E Direct download from storage.googleapis.com         correlation_id=e4914fb6bb15471f94c2fbc429b9ba7b id=14595616713 status=302 token=6f_ubjpjX
2026-05-29T04:21:52.227158Z 01E Downloading artifacts from coordinator... ok        correlation_id=e4914fb6bb15471f94c2fbc429b9ba7b id=14595616713 status=302 token=6f_ubjpjX
2026-05-29T04:21:52.867362Z 00O section_end:1780028512:download_artifacts
2026-05-29T04:21:52.867366Z 00O+section_start:1780028512:step_script
2026-05-29T04:21:52.867738Z 00O+Executing "step_script" stage of the job script
2026-05-29T04:21:52.867755Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-05-29T04:21:52.868889Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-05-29T04:21:53.246959Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-05-29T04:21:53.256603Z 01O $ mkdir -p ~/.R
2026-05-29T04:21:53.258397Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-05-29T04:21:53.497673Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’, ‘evaluate’, ‘highr’
2026-05-29T04:21:53.497679Z 01E 
2026-05-29T04:23:03.520361Z 01O $ echo 'CFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-05-29T04:23:03.520374Z 01O $ echo 'CXXFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-05-29T04:23:03.520379Z 01O $ res1=0; R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command
2026-05-29T04:23:03.711753Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-05-29T04:23:03.711961Z 01O * using R version 4.5.0 (2025-04-11)
2026-05-29T04:23:03.712165Z 01O * using platform: x86_64-pc-linux-gnu
2026-05-29T04:23:03.712450Z 01O * R was compiled by
2026-05-29T04:23:03.712638Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-05-29T04:23:03.712639Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-05-29T04:23:03.712826Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-05-29T04:23:03.713085Z 01O * using session charset: UTF-8
2026-05-29T04:23:04.457262Z 01O * using option ‘--as-cran’
2026-05-29T04:23:04.457720Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-05-29T04:23:04.460180Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-05-29T04:23:04.460415Z 01O * package encoding: UTF-8
2026-05-29T04:23:04.460694Z 01O * checking CRAN incoming feasibility ... OK
2026-05-29T04:23:05.036350Z 01O * checking package namespace information ... OK
2026-05-29T04:23:05.049422Z 01O * checking package dependencies ... OK
2026-05-29T04:23:06.099416Z 01O * checking if this is a source package ... OK
2026-05-29T04:23:06.102618Z 01O * checking if there is a namespace ... OK
2026-05-29T04:23:06.107193Z 01O * checking for .dll and .exe files ... OK
2026-05-29T04:23:06.107693Z 01O * checking for hidden files and directories ... OK
2026-05-29T04:23:06.110842Z 01O * checking for portable file names ... OK
2026-05-29T04:23:06.127161Z 01O * checking for sufficient/correct file permissions ... OK
2026-05-29T04:23:06.131497Z 01O * checking whether package ‘data.table’ can be installed ... [26s/26s] OK
2026-05-29T04:23:31.908040Z 01O * used C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’
2026-05-29T04:23:31.908597Z 01O * checking installed package size ... OK
2026-05-29T04:23:31.927394Z 01O * checking package directory ... OK
2026-05-29T04:23:31.927961Z 01O * checking for future file timestamps ... OK
2026-05-29T04:23:31.928561Z 01O * checking ‘build’ directory ... OK
2026-05-29T04:23:31.929514Z 01O * checking DESCRIPTION meta-information ... OK
2026-05-29T04:23:32.822050Z 01O * checking top-level files ... OK
2026-05-29T04:23:34.421149Z 01O * checking for left-over files ... OK
2026-05-29T04:23:34.424697Z 01O * checking index information ... OK
2026-05-29T04:23:34.602189Z 01O * checking package subdirectories ... OK
2026-05-29T04:23:35.009080Z 01O * checking code files for non-ASCII characters ... OK
2026-05-29T04:23:35.064095Z 01O * checking R files for syntax errors ... OK
2026-05-29T04:23:35.147366Z 01O * checking whether the package can be loaded ... OK
2026-05-29T04:23:35.366088Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-05-29T04:23:35.539684Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-05-29T04:23:35.707149Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-05-29T04:23:35.881475Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-05-29T04:23:36.098530Z 01O * checking loading without being on the library search path ... OK
2026-05-29T04:23:36.519703Z 01O * checking whether startup messages can be suppressed ... OK
2026-05-29T04:23:36.728759Z 01O * checking use of S3 registration ... OK
2026-05-29T04:23:37.780105Z 01O * checking dependencies in R code ... OK
2026-05-29T04:23:38.688882Z 01O * checking S3 generic/method consistency ... OK
2026-05-29T04:23:39.056043Z 01O * checking replacement functions ... OK
2026-05-29T04:23:39.269762Z 01O * checking foreign function calls ... OK
2026-05-29T04:23:40.101904Z 01O * checking R code for possible problems ... [17s/17s] OK
2026-05-29T04:23:57.475135Z 01O * checking Rd files ... OK
2026-05-29T04:23:58.088009Z 01O * checking Rd metadata ... OK
2026-05-29T04:23:58.136220Z 01O * checking Rd line widths ... OK
2026-05-29T04:23:58.443972Z 01O * checking Rd cross-references ... OK
2026-05-29T04:23:59.093457Z 01O * checking for missing documentation entries ... OK
2026-05-29T04:23:59.331495Z 01O * checking for code/documentation mismatches ... OK
2026-05-29T04:24:00.387746Z 01O * checking Rd \usage sections ... OK
2026-05-29T04:24:01.353649Z 01O * checking Rd contents ... OK
2026-05-29T04:24:01.836276Z 01O * checking for unstated dependencies in examples ... OK
2026-05-29T04:24:02.347316Z 01O * checking line endings in shell scripts ... OK
2026-05-29T04:24:02.347962Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-05-29T04:24:02.366849Z 01O * checking line endings in Makefiles ... OK
2026-05-29T04:24:02.367551Z 01O * checking compilation flags in Makevars ... OK
2026-05-29T04:24:02.430291Z 01O * checking for GNU extensions in Makefiles ... OK
2026-05-29T04:24:02.431251Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-05-29T04:24:02.432654Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-05-29T04:24:02.437195Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
2026-05-29T04:24:02.444066Z 01O * checking pragmas in C/C++ headers and code ... OK
2026-05-29T04:24:02.469661Z 01O * checking compilation flags used ... OK
2026-05-29T04:24:02.471371Z 01O * checking compiled code ... NOTE
2026-05-29T04:24:02.554860Z 01O File ‘data.table/libs/data_table.so’:
2026-05-29T04:24:02.554862Z 01O   Found non-API calls to R: ‘IS_GROWABLE’, ‘LEVELS’, ‘R_GetConnection’,
2026-05-29T04:24:02.554862Z 01O     ‘R_ReadConnection’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’,
2026-05-29T04:24:02.554863Z 01O     ‘SET_TRUELENGTH’, ‘TRUELENGTH’, ‘XTRUELENGTH’
2026-05-29T04:24:02.555564Z 01O 
2026-05-29T04:24:02.555598Z 01O Compiled code should not call non-API entry points in R.
2026-05-29T04:24:02.555599Z 01O 
2026-05-29T04:24:02.555599Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
2026-05-29T04:24:02.555600Z 01O and section ‘Moving into C API compliance’ for issues with the use of
2026-05-29T04:24:02.555600Z 01O non-API entry points.
2026-05-29T04:24:02.556748Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-05-29T04:24:02.774010Z 01O * checking files in ‘vignettes’ ... OK
2026-05-29T04:24:02.988341Z 01O * checking examples ... OK
2026-05-29T04:24:10.653633Z 01O * checking examples with --run-donttest ... OK
2026-05-29T04:24:20.577891Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-05-29T04:24:20.649837Z 01O * checking tests ...
2026-05-29T04:24:20.803497Z 01E   Running ‘autoprint.R’
2026-05-29T04:24:21.065537Z 01E   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2026-05-29T04:24:21.073428Z 01E   Running ‘froll.R’ [449s/428s]
2026-05-29T04:31:28.664031Z 01E   Running ‘litedown.R’
2026-05-29T04:31:28.991643Z 01E   Running ‘main.R’ [49s/45s]
2026-05-29T04:32:14.399658Z 01E   Running ‘mergelist.R’
2026-05-29T04:32:15.992368Z 01E   Running ‘nafill.R’
2026-05-29T04:32:16.506837Z 01E   Running ‘optimize.R’
2026-05-29T04:32:17.944370Z 01E   Running ‘other.R’
2026-05-29T04:32:18.174506Z 01E   Running ‘programming.R’
2026-05-29T04:32:18.808666Z 01E   Running ‘S4.R’
2026-05-29T04:32:19.158530Z 01E   Running ‘types.R’
2026-05-29T04:32:19.427429Z 01O  [505s/479s] OK
2026-05-29T04:32:19.551885Z 01O * checking for unstated dependencies in vignettes ... OK
2026-05-29T04:32:19.853716Z 01O * checking package vignettes ... OK
2026-05-29T04:32:20.654177Z 01O * checking re-building of vignette outputs ... [29s/30s] OK
2026-05-29T04:32:50.380271Z 01O * checking PDF version of manual ... OK
2026-05-29T04:32:56.672006Z 01O * checking HTML version of manual ... OK
2026-05-29T04:32:59.887037Z 01O * checking for non-standard things in the check directory ... OK
2026-05-29T04:32:59.887609Z 01O * checking for detritus in the temp directory ... OK
2026-05-29T04:32:59.888502Z 01O * DONE
2026-05-29T04:32:59.888970Z 01E 
2026-05-29T04:32:59.889047Z 01O Status: 1 NOTE
2026-05-29T04:32:59.889258Z 01E See
2026-05-29T04:32:59.889258Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2026-05-29T04:32:59.889260Z 01E for details.
2026-05-29T04:32:59.889357Z 01E 
2026-05-29T04:33:00.248499Z 00O section_end:1780029180:step_script
2026-05-29T04:33:00.248503Z 00O+section_start:1780029180:after_script
2026-05-29T04:33:00.248879Z 00O+Running after_script
2026-05-29T04:33:00.614889Z 01O Running after script...
2026-05-29T04:33:00.614914Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-05-29T04:33:00.616351Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-05-29T04:33:00.616427Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-05-29T04:33:00.616482Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-05-29T04:33:00.616562Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-05-29T04:33:00.789740Z 00O section_end:1780029180:after_script
2026-05-29T04:33:00.789744Z 00O+section_start:1780029180:upload_artifacts_on_success
2026-05-29T04:33:00.790469Z 00O+Uploading artifacts for successful job
2026-05-29T04:33:01.218122Z 01O Uploading artifacts...
2026-05-29T04:33:01.279113Z 01E bus/test-lin-rel-cran: found 713 matching artifact files and directories 
2026-05-29T04:33:03.824475Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=76647618de5049bcbff724e0975f15cd id=14595616716 status=201 token=6f_ubjpjX
2026-05-29T04:33:04.013587Z 00O section_end:1780029184:upload_artifacts_on_success
2026-05-29T04:33:04.013593Z 00O+section_start:1780029184:cleanup_file_variables
2026-05-29T04:33:04.013706Z 00O+Cleaning up project directory and file based variables
2026-05-29T04:33:04.553778Z 00O section_end:1780029184:cleanup_file_variables
2026-05-29T04:33:04.553782Z 00O+
2026-05-29T04:33:04.589168Z 00O Job succeeded