2026-02-26T04:21:40.188164Z 00O Running with gitlab-runner 18.9.0~pre.607.g1fd8d947 (1fd8d947)
2026-02-26T04:21:40.188172Z 00O   on green-1.saas-linux-medium-amd64.runners-manager.gitlab.com/default _2KYLxN2j, system ID: s_e3d0e4a7da2c
2026-02-26T04:21:40.188190Z 00O Resolving secrets
2026-02-26T04:21:40.188298Z 00O section_start:1772079700:prepare_executor
2026-02-26T04:21:40.188299Z 00O+Preparing the "docker+machine" executor
2026-02-26T04:21:40.316121Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-02-26T04:21:44.199510Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-02-26T04:21:44.200048Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-02-26T04:21:44.200056Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-02-26T04:21:55.492366Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-02-26T04:21:55.492426Z 00O section_end:1772079715:prepare_executor
2026-02-26T04:21:55.492428Z 00O+section_start:1772079715:prepare_script
2026-02-26T04:21:55.492501Z 00O+Preparing environment
2026-02-26T04:21:55.493177Z 00O Using effective pull policy of [always] for container sha256:986b4790562e0b53173694d670be6757a767726112047f4d53322d9653156fb3
2026-02-26T04:22:06.512575Z 01O Running on runner-2kylxn2j-project-3622566-concurrent-0 via runner-2kylxn2j-s-l-m-amd64-1772079410-109a4fa0...
2026-02-26T04:22:06.671037Z 00O section_end:1772079726:prepare_script
2026-02-26T04:22:06.671041Z 00O+section_start:1772079726:get_sources
2026-02-26T04:22:06.671619Z 00O+Getting source from Git repository
2026-02-26T04:22:07.018477Z 01O Gitaly correlation ID: a24b6ca9d8f147eaac6558be94aa97e7
2026-02-26T04:22:07.024425Z 01O Fetching changes...
2026-02-26T04:22:07.027553Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-02-26T04:22:07.029698Z 01O Created fresh repository.
2026-02-26T04:22:12.558678Z 01O Checking out 67e78404 as detached HEAD (ref is master)...
2026-02-26T04:22:12.744805Z 01O 
2026-02-26T04:22:12.744807Z 01O Skipping Git submodules setup
2026-02-26T04:22:12.744808Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-02-26T04:22:12.969978Z 00O section_end:1772079732:get_sources
2026-02-26T04:22:12.969981Z 00O+section_start:1772079732:download_artifacts
2026-02-26T04:22:12.972011Z 00O+Downloading artifacts
2026-02-26T04:22:13.364133Z 01O Downloading artifacts for mirror-packages (13270516135)...
2026-02-26T04:22:14.429040Z 01E Downloading artifacts from coordinator... ok        correlation_id=3b4a5cc18e0c465fb88e7f0198cb09a2 host=storage.googleapis.com id=13270516135 responseStatus=200 OK token=6c_YMGsgV
2026-02-26T04:22:14.655073Z 01O Downloading artifacts for build (13270516140)...
2026-02-26T04:22:15.065155Z 01E Downloading artifacts from coordinator... ok        correlation_id=e209d7c19043458095d4709b55517901 host=storage.googleapis.com id=13270516140 responseStatus=200 OK token=6c_YMGsgV
2026-02-26T04:22:15.769322Z 00O section_end:1772079735:download_artifacts
2026-02-26T04:22:15.769341Z 00O+section_start:1772079735:step_script
2026-02-26T04:22:15.769753Z 00O+Executing "step_script" stage of the job script
2026-02-26T04:22:15.769769Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-02-26T04:22:15.770720Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-02-26T04:22:16.114502Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-02-26T04:22:16.123511Z 01O $ mkdir -p ~/.R
2026-02-26T04:22:16.124930Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-02-26T04:22:16.339316Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’, ‘evaluate’, ‘highr’
2026-02-26T04:22:16.339318Z 01E 
2026-02-26T04:23:21.532408Z 01O $ echo 'CFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-02-26T04:23:21.532455Z 01O $ echo 'CXXFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-02-26T04:23:21.532474Z 01O $ res1=0; R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command
2026-02-26T04:23:21.697392Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-02-26T04:23:21.697545Z 01O * using R version 4.5.0 (2025-04-11)
2026-02-26T04:23:21.697780Z 01O * using platform: x86_64-pc-linux-gnu
2026-02-26T04:23:21.698021Z 01O * R was compiled by
2026-02-26T04:23:21.698223Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-02-26T04:23:21.698224Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-02-26T04:23:21.698442Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-02-26T04:23:21.698708Z 01O * using session charset: UTF-8
2026-02-26T04:23:22.430367Z 01O * using option ‘--as-cran’
2026-02-26T04:23:22.430722Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-02-26T04:23:22.433266Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-02-26T04:23:22.433444Z 01O * package encoding: UTF-8
2026-02-26T04:23:22.433687Z 01O * checking CRAN incoming feasibility ... OK
2026-02-26T04:23:22.976675Z 01O * checking package namespace information ... OK
2026-02-26T04:23:22.983879Z 01O * checking package dependencies ... OK
2026-02-26T04:23:23.969655Z 01O * checking if this is a source package ... OK
2026-02-26T04:23:23.973189Z 01O * checking if there is a namespace ... OK
2026-02-26T04:23:23.977454Z 01O * checking for .dll and .exe files ... OK
2026-02-26T04:23:23.978059Z 01O * checking for hidden files and directories ... OK
2026-02-26T04:23:23.981008Z 01O * checking for portable file names ... OK
2026-02-26T04:23:23.985240Z 01O * checking for sufficient/correct file permissions ... OK
2026-02-26T04:23:23.989147Z 01O * checking whether package ‘data.table’ can be installed ... [24s/24s] OK
2026-02-26T04:23:47.773521Z 01O * used C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’
2026-02-26T04:23:47.773860Z 01O * checking installed package size ... OK
2026-02-26T04:23:47.789455Z 01O * checking package directory ... OK
2026-02-26T04:23:47.789857Z 01O * checking for future file timestamps ... OK
2026-02-26T04:23:47.790581Z 01O * checking ‘build’ directory ... OK
2026-02-26T04:23:47.791496Z 01O * checking DESCRIPTION meta-information ... OK
2026-02-26T04:23:48.592975Z 01O * checking top-level files ... OK
2026-02-26T04:23:50.114030Z 01O * checking for left-over files ... OK
2026-02-26T04:23:50.117142Z 01O * checking index information ... OK
2026-02-26T04:23:50.275240Z 01O * checking package subdirectories ... OK
2026-02-26T04:23:50.648654Z 01O * checking code files for non-ASCII characters ... OK
2026-02-26T04:23:50.698292Z 01O * checking R files for syntax errors ... OK
2026-02-26T04:23:50.777088Z 01O * checking whether the package can be loaded ... OK
2026-02-26T04:23:50.969967Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-02-26T04:23:51.127067Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-02-26T04:23:51.280529Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-02-26T04:23:51.436052Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-02-26T04:23:51.628210Z 01O * checking loading without being on the library search path ... OK
2026-02-26T04:23:52.022564Z 01O * checking whether startup messages can be suppressed ... OK
2026-02-26T04:23:52.220515Z 01O * checking use of S3 registration ... OK
2026-02-26T04:23:53.168285Z 01O * checking dependencies in R code ... OK
2026-02-26T04:23:53.996090Z 01O * checking S3 generic/method consistency ... OK
2026-02-26T04:23:54.315144Z 01O * checking replacement functions ... OK
2026-02-26T04:23:54.509377Z 01O * checking foreign function calls ... OK
2026-02-26T04:23:55.287913Z 01O * checking R code for possible problems ... [16s/16s] OK
2026-02-26T04:24:11.493543Z 01O * checking Rd files ... OK
2026-02-26T04:24:12.064973Z 01O * checking Rd metadata ... OK
2026-02-26T04:24:12.107519Z 01O * checking Rd line widths ... OK
2026-02-26T04:24:12.374220Z 01O * checking Rd cross-references ... OK
2026-02-26T04:24:12.951118Z 01O * checking for missing documentation entries ... OK
2026-02-26T04:24:13.174428Z 01O * checking for code/documentation mismatches ... OK
2026-02-26T04:24:14.108724Z 01O * checking Rd \usage sections ... OK
2026-02-26T04:24:14.932765Z 01O * checking Rd contents ... OK
2026-02-26T04:24:15.362375Z 01O * checking for unstated dependencies in examples ... OK
2026-02-26T04:24:15.813131Z 01O * checking line endings in shell scripts ... OK
2026-02-26T04:24:15.813789Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-02-26T04:24:15.831997Z 01O * checking line endings in Makefiles ... OK
2026-02-26T04:24:15.832545Z 01O * checking compilation flags in Makevars ... OK
2026-02-26T04:24:15.883469Z 01O * checking for GNU extensions in Makefiles ... OK
2026-02-26T04:24:15.884341Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-02-26T04:24:15.885555Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-02-26T04:24:15.889994Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
2026-02-26T04:24:15.896506Z 01O * checking pragmas in C/C++ headers and code ... OK
2026-02-26T04:24:15.917221Z 01O * checking compilation flags used ... OK
2026-02-26T04:24:15.919150Z 01O * checking compiled code ... NOTE
2026-02-26T04:24:15.991871Z 01O File ‘data.table/libs/data_table.so’:
2026-02-26T04:24:15.991872Z 01O   Found non-API calls to R: ‘IS_GROWABLE’, ‘LEVELS’, ‘SETLENGTH’,
2026-02-26T04:24:15.991873Z 01O     ‘SET_GROWABLE_BIT’, ‘SET_TRUELENGTH’, ‘TRUELENGTH’, ‘XTRUELENGTH’
2026-02-26T04:24:15.992593Z 01O 
2026-02-26T04:24:15.992594Z 01O Compiled code should not call non-API entry points in R.
2026-02-26T04:24:15.992617Z 01O 
2026-02-26T04:24:15.992617Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
2026-02-26T04:24:15.992618Z 01O and section ‘Moving into C API compliance’ for issues with the use of
2026-02-26T04:24:15.992619Z 01O non-API entry points.
2026-02-26T04:24:15.994002Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-02-26T04:24:16.184849Z 01O * checking files in ‘vignettes’ ... OK
2026-02-26T04:24:16.384982Z 01O * checking examples ... OK
2026-02-26T04:24:22.918352Z 01O * checking examples with --run-donttest ... OK
2026-02-26T04:24:31.748723Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-02-26T04:24:31.813886Z 01O * checking tests ...
2026-02-26T04:24:31.952295Z 01E   Running ‘autoprint.R’
2026-02-26T04:24:32.187602Z 01E   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2026-02-26T04:24:32.194896Z 01E   Running ‘froll.R’ [416s/399s]
2026-02-26T04:31:10.746257Z 01E   Running ‘litedown.R’
2026-02-26T04:31:11.040586Z 01E   Running ‘main.R’ [46s/42s]
2026-02-26T04:31:53.096922Z 01E   Running ‘mergelist.R’
2026-02-26T04:31:54.640454Z 01E   Running ‘nafill.R’
2026-02-26T04:31:55.104594Z 01E   Running ‘optimize.R’
2026-02-26T04:31:56.373541Z 01E   Running ‘other.R’
2026-02-26T04:31:56.589365Z 01E   Running ‘programming.R’
2026-02-26T04:31:57.162466Z 01E   Running ‘S4.R’
2026-02-26T04:31:57.466963Z 01E   Running ‘types.R’
2026-02-26T04:31:57.708246Z 01O  [468s/446s] OK
2026-02-26T04:31:57.800692Z 01O * checking for unstated dependencies in vignettes ... OK
2026-02-26T04:31:58.059669Z 01O * checking package vignettes ... OK
2026-02-26T04:31:58.821172Z 01O * checking re-building of vignette outputs ... [28s/28s] OK
2026-02-26T04:32:27.348473Z 01O * checking PDF version of manual ... OK
2026-02-26T04:32:33.021556Z 01O * checking HTML version of manual ... OK
2026-02-26T04:32:36.012213Z 01O * checking for non-standard things in the check directory ... OK
2026-02-26T04:32:36.012719Z 01O * checking for detritus in the temp directory ... OK
2026-02-26T04:32:36.013401Z 01O * DONE
2026-02-26T04:32:36.013783Z 01E 
2026-02-26T04:32:36.013868Z 01O Status: 1 NOTE
2026-02-26T04:32:36.014093Z 01E See
2026-02-26T04:32:36.014094Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2026-02-26T04:32:36.014095Z 01E for details.
2026-02-26T04:32:36.014232Z 01E 
2026-02-26T04:32:36.343356Z 00O section_end:1772080356:step_script
2026-02-26T04:32:36.343359Z 00O+section_start:1772080356:after_script
2026-02-26T04:32:36.343721Z 00O+Running after_script
2026-02-26T04:32:36.687360Z 01O Running after script...
2026-02-26T04:32:36.687383Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-02-26T04:32:36.688505Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-02-26T04:32:36.688581Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-02-26T04:32:36.688644Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-02-26T04:32:36.688767Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-02-26T04:32:36.854671Z 00O section_end:1772080356:after_script
2026-02-26T04:32:36.854674Z 00O+section_start:1772080356:upload_artifacts_on_success
2026-02-26T04:32:36.855393Z 00O+Uploading artifacts for successful job
2026-02-26T04:32:37.233344Z 01O Uploading artifacts...
2026-02-26T04:32:37.290609Z 01E bus/test-lin-rel-cran: found 712 matching artifact files and directories 
2026-02-26T04:32:39.567773Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=f84c54f451cd4afdb8d084e5741c6a09 id=13270516151 responseStatus=201 Created token=6c_YMGsgV
2026-02-26T04:32:39.743216Z 00O section_end:1772080359:upload_artifacts_on_success
2026-02-26T04:32:39.743223Z 00O+section_start:1772080359:cleanup_file_variables
2026-02-26T04:32:39.743320Z 00O+Cleaning up project directory and file based variables
2026-02-26T04:32:40.214096Z 00O section_end:1772080360:cleanup_file_variables
2026-02-26T04:32:40.214100Z 00O+
2026-02-26T04:32:40.255934Z 00O Job succeeded