2026-04-13T04:22:05.696015Z 00O Running with gitlab-runner 18.10.0~pre.705.ge11dde90 (e11dde90)
2026-04-13T04:22:05.696025Z 00O   on blue-4.saas-linux-medium-amd64.runners-manager.gitlab.com/default DS1-6aDu5, system ID: s_eacbc5a4b586
2026-04-13T04:22:05.696030Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true
2026-04-13T04:22:05.696046Z 00O Resolving secrets
2026-04-13T04:22:05.696169Z 00O section_start:1776054125:prepare_executor
2026-04-13T04:22:05.696170Z 00O+Preparing the "docker+machine" executor
2026-04-13T04:22:05.821705Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-04-13T04:22:09.765262Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-04-13T04:22:09.765708Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-04-13T04:22:09.765716Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-04-13T04:22:15.464546Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-04-13T04:22:15.464617Z 00O section_end:1776054135:prepare_executor
2026-04-13T04:22:15.464619Z 00O+section_start:1776054135:prepare_script
2026-04-13T04:22:15.464699Z 00O+Preparing environment
2026-04-13T04:22:15.465463Z 00O Using effective pull policy of [always] for container sha256:1b63de056b20bfa47370a337f28e1c551979c059430985eebb6fb1525af9aa2a
2026-04-13T04:22:20.473215Z 01O Running on runner-ds1-6adu5-project-3622566-concurrent-0 via runner-ds1-6adu5-s-l-m-amd64-1776054053-e94499cb...
2026-04-13T04:22:20.639237Z 00O section_end:1776054140:prepare_script
2026-04-13T04:22:20.639246Z 00O+section_start:1776054140:get_sources
2026-04-13T04:22:20.639798Z 00O+Getting source from Git repository
2026-04-13T04:22:20.995521Z 01O Gitaly correlation ID: 82772ce0c2bd415fb80d669d1b390341
2026-04-13T04:22:21.001798Z 01O Fetching changes...
2026-04-13T04:22:21.005009Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-04-13T04:22:21.007118Z 01O Created fresh repository.
2026-04-13T04:22:26.482484Z 01O Checking out 8364344c as detached HEAD (ref is master)...
2026-04-13T04:22:26.670105Z 01O 
2026-04-13T04:22:26.670110Z 01O Skipping Git submodules setup
2026-04-13T04:22:26.670154Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-04-13T04:22:26.897655Z 00O section_end:1776054146:get_sources
2026-04-13T04:22:26.897659Z 00O+section_start:1776054146:download_artifacts
2026-04-13T04:22:26.898372Z 00O+Downloading artifacts
2026-04-13T04:22:27.294085Z 01O Downloading artifacts for build (13888029259)...
2026-04-13T04:22:27.646046Z 01E Downloading artifacts from coordinator... ok        correlation_id=0230a201beb54445bf6b456239adefa9 host=storage.googleapis.com id=13888029259 responseStatus=200 OK token=6e_tUFBRN
2026-04-13T04:22:27.664131Z 01O Downloading artifacts for mirror-packages (13888029255)...
2026-04-13T04:22:28.759030Z 01E Downloading artifacts from coordinator... ok        correlation_id=48580a5e437b4f43a54f9f60dbf75851 host=storage.googleapis.com id=13888029255 responseStatus=200 OK token=6e_tUFBRN
2026-04-13T04:22:29.780101Z 00O section_end:1776054149:download_artifacts
2026-04-13T04:22:29.780106Z 00O+section_start:1776054149:step_script
2026-04-13T04:22:29.780535Z 00O+Executing "step_script" stage of the job script
2026-04-13T04:22:29.780554Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-04-13T04:22:29.781314Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-04-13T04:22:30.119289Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-04-13T04:22:30.128782Z 01O $ mkdir -p ~/.R
2026-04-13T04:22:30.130102Z 01O $ echo 'CFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-04-13T04:22:30.130246Z 01O $ echo 'CXXFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-04-13T04:22:30.130342Z 01O $ R CMD check --no-manual --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
2026-04-13T04:22:30.303982Z 01O * using log directory '/builds/Rdatatable/data.table/data.table.Rcheck'
2026-04-13T04:22:30.304099Z 01O * using R version 4.5.0 (2025-04-11)
2026-04-13T04:22:30.304309Z 01O * using platform: x86_64-pc-linux-gnu
2026-04-13T04:22:30.304516Z 01O * R was compiled by
2026-04-13T04:22:30.304698Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-04-13T04:22:30.304699Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-04-13T04:22:30.304861Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-04-13T04:22:30.305577Z 01O * using session charset: ASCII
2026-04-13T04:22:31.065903Z 01O * using options '--no-manual --ignore-vignettes'
2026-04-13T04:22:31.066229Z 01O * checking for file 'data.table/DESCRIPTION' ... OK
2026-04-13T04:22:31.068740Z 01O * this is package 'data.table' version '1.18.99'
2026-04-13T04:22:31.068913Z 01O * package encoding: UTF-8
2026-04-13T04:22:31.069141Z 01O * checking package namespace information ... OK
2026-04-13T04:22:31.075961Z 01O * checking package dependencies ... INFO
2026-04-13T04:22:31.947199Z 01O Packages suggested but not available for checking:
2026-04-13T04:22:31.947201Z 01O   'bit64', 'R.utils', 'xts', 'zoo', 'yaml', 'litedown'
2026-04-13T04:22:31.947201Z 01O 
2026-04-13T04:22:31.947202Z 01O Packages which this enhances but not available for checking:
2026-04-13T04:22:31.947202Z 01O   'knitr', 'xfun'
2026-04-13T04:22:31.947313Z 01O * checking if this is a source package ... OK
2026-04-13T04:22:31.950112Z 01O * checking if there is a namespace ... OK
2026-04-13T04:22:31.953681Z 01O * checking for .dll and .exe files ... OK
2026-04-13T04:22:31.954205Z 01O * checking for hidden files and directories ... OK
2026-04-13T04:22:31.956966Z 01O * checking for portable file names ... OK
2026-04-13T04:22:31.960829Z 01O * checking for sufficient/correct file permissions ... OK
2026-04-13T04:22:31.962355Z 01O * checking whether package 'data.table' can be installed ... OK
2026-04-13T04:22:44.955258Z 01O * used C compiler: 'gcc (Debian 14.2.0-19) 14.2.0'
2026-04-13T04:22:44.955649Z 01O * checking installed package size ... INFO
2026-04-13T04:22:44.959912Z 01O   installed size is  7.6Mb
2026-04-13T04:22:44.960466Z 01O   sub-directories of 1Mb or more:
2026-04-13T04:22:44.960965Z 01O     doc     1.1Mb
2026-04-13T04:22:44.960965Z 01O     libs    1.2Mb
2026-04-13T04:22:44.960966Z 01O     po      1.7Mb
2026-04-13T04:22:44.960966Z 01O     tests   2.2Mb
2026-04-13T04:22:44.961146Z 01O * checking package directory ... OK
2026-04-13T04:22:44.961554Z 01O * checking DESCRIPTION meta-information ... OK
2026-04-13T04:22:45.713169Z 01O * checking top-level files ... OK
2026-04-13T04:22:45.713973Z 01O * checking for left-over files ... OK
2026-04-13T04:22:45.716293Z 01O * checking index information ... OK
2026-04-13T04:22:45.776365Z 01O * checking package subdirectories ... OK
2026-04-13T04:22:45.891345Z 01O * checking code files for non-ASCII characters ... OK
2026-04-13T04:22:45.935647Z 01O * checking R files for syntax errors ... WARNING
2026-04-13T04:22:46.000972Z 01O Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
2026-04-13T04:22:46.000972Z 01O   OS reports request to set locale to "en_US.UTF-8" cannot be honored
2026-04-13T04:22:46.001155Z 01O * checking whether the package can be loaded ... OK
2026-04-13T04:22:46.193195Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-04-13T04:22:46.343579Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-04-13T04:22:46.490903Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-04-13T04:22:46.641253Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-04-13T04:22:46.830243Z 01O * checking loading without being on the library search path ... OK
2026-04-13T04:22:47.200701Z 01O * checking whether startup messages can be suppressed ... OK
2026-04-13T04:22:47.381696Z 01O * checking dependencies in R code ... OK
2026-04-13T04:22:48.033220Z 01O * checking S3 generic/method consistency ... OK
2026-04-13T04:22:48.358730Z 01O * checking replacement functions ... OK
2026-04-13T04:22:48.538144Z 01O * checking foreign function calls ... OK
2026-04-13T04:22:49.283224Z 01O * checking R code for possible problems ... OK
2026-04-13T04:22:59.699042Z 01O * checking Rd files ... OK
2026-04-13T04:23:00.269708Z 01O * checking Rd metadata ... OK
2026-04-13T04:23:00.307214Z 01O * checking Rd cross-references ... INFO
2026-04-13T04:23:03.542057Z 01O Packages unavailable to check Rd xrefs: 'bit64', 'yaml'
2026-04-13T04:23:03.542111Z 01O * checking for missing documentation entries ... OK
2026-04-13T04:23:03.762996Z 01O * checking for code/documentation mismatches ... OK
2026-04-13T04:23:04.729584Z 01O * checking Rd \usage sections ... OK
2026-04-13T04:23:05.579802Z 01O * checking Rd contents ... OK
2026-04-13T04:23:06.017093Z 01O * checking for unstated dependencies in examples ... OK
2026-04-13T04:23:06.468113Z 01O * checking line endings in shell scripts ... OK
2026-04-13T04:23:06.468619Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-04-13T04:23:06.485748Z 01O * checking line endings in Makefiles ... OK
2026-04-13T04:23:06.486161Z 01O * checking compilation flags in Makevars ... OK
2026-04-13T04:23:06.535171Z 01O * checking for GNU extensions in Makefiles ... OK
2026-04-13T04:23:06.535939Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-04-13T04:23:06.536876Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-04-13T04:23:06.542076Z 01O * checking compiled code ... NOTE
2026-04-13T04:23:06.605661Z 01O File 'data.table/libs/data_table.so':
2026-04-13T04:23:06.605663Z 01O   Found non-API calls to R: 'IS_GROWABLE', 'LEVELS', 'R_GetConnection',
2026-04-13T04:23:06.605663Z 01O     'R_ReadConnection', 'SETLENGTH', 'SET_GROWABLE_BIT',
2026-04-13T04:23:06.605664Z 01O     'SET_TRUELENGTH', 'TRUELENGTH', 'XTRUELENGTH'
2026-04-13T04:23:06.606075Z 01O 
2026-04-13T04:23:06.606076Z 01O Compiled code should not call non-API entry points in R.
2026-04-13T04:23:06.606077Z 01O 
2026-04-13T04:23:06.606077Z 01O See 'Writing portable packages' in the 'Writing R Extensions' manual,
2026-04-13T04:23:06.606078Z 01O and section 'Moving into C API compliance' for issues with the use of
2026-04-13T04:23:06.606079Z 01O non-API entry points.
2026-04-13T04:23:06.606426Z 01O * checking installed files from 'inst/doc' ... OK
2026-04-13T04:23:06.750578Z 01O * checking files in 'vignettes' ... SKIPPED
2026-04-13T04:23:06.750984Z 01O * checking examples ... OK
2026-04-13T04:23:10.061724Z 01O * checking for unstated dependencies in 'tests' ... OK
2026-04-13T04:23:10.122977Z 01O * checking tests ...
2026-04-13T04:23:10.258431Z 01E   Running 'S4.R'
2026-04-13T04:23:10.557551Z 01E   Running 'autoprint.R'
2026-04-13T04:23:10.781188Z 01E   Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
2026-04-13T04:23:10.787678Z 01E   Running 'froll.R'
2026-04-13T04:27:04.919674Z 01E   Running 'litedown.R'
2026-04-13T04:27:05.054782Z 01E   Running 'main.R'
2026-04-13T04:27:35.781155Z 01E   Running 'mergelist.R'
2026-04-13T04:27:37.249111Z 01E   Running 'nafill.R'
2026-04-13T04:27:37.636738Z 01E   Running 'optimize.R'
2026-04-13T04:27:38.811602Z 01E   Running 'other.R'
2026-04-13T04:27:39.006698Z 01E   Running 'programming.R'
2026-04-13T04:27:39.571156Z 01E   Running 'types.R'
2026-04-13T04:27:39.793983Z 01O  OK
2026-04-13T04:27:39.794404Z 01O * DONE
2026-04-13T04:27:39.794823Z 01E 
2026-04-13T04:27:39.794911Z 01O Status: 1 WARNING, 1 NOTE
2026-04-13T04:27:39.795070Z 01E See
2026-04-13T04:27:39.795070Z 01E   '/builds/Rdatatable/data.table/data.table.Rcheck/00check.log'
2026-04-13T04:27:39.795071Z 01E for details.
2026-04-13T04:27:39.795185Z 01E 
2026-04-13T04:27:39.973466Z 00O section_end:1776054459:step_script
2026-04-13T04:27:39.973467Z 00O+section_start:1776054459:after_script
2026-04-13T04:27:39.973854Z 00O+Running after_script
2026-04-13T04:27:40.310747Z 01O Running after script...
2026-04-13T04:27:40.310765Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-04-13T04:27:40.311656Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-04-13T04:27:40.311863Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-04-13T04:27:40.311864Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-04-13T04:27:40.311936Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-04-13T04:27:40.470244Z 00O section_end:1776054460:after_script
2026-04-13T04:27:40.470247Z 00O+section_start:1776054460:upload_artifacts_on_success
2026-04-13T04:27:40.470920Z 00O+Uploading artifacts for successful job
2026-04-13T04:27:40.867708Z 01O Uploading artifacts...
2026-04-13T04:27:40.942480Z 01E bus/test-lin-rel-vanilla: found 694 matching artifact files and directories 
2026-04-13T04:27:42.911656Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=765148eba7804864916a460b3cb74c06 id=13888029262 responseStatus=201 Created token=6e_tUFBRN
2026-04-13T04:27:43.081328Z 00O section_end:1776054463:upload_artifacts_on_success
2026-04-13T04:27:43.081331Z 00O+section_start:1776054463:cleanup_file_variables
2026-04-13T04:27:43.081424Z 00O+Cleaning up project directory and file based variables
2026-04-13T04:27:43.572542Z 00O section_end:1776054463:cleanup_file_variables
2026-04-13T04:27:43.572545Z 00O+
2026-04-13T04:27:43.583177Z 00O Job succeeded