2026-10-12T04:21:04.447756Z 00O Running with gitlab-runner 19.5.0~pre.2272.g28a18501 (28a18501)
2026-10-12T04:21:04.447786Z 00O   on k8s.saas-linux-medium-amd64.runners-manager.gitlab.com/default j8vTLRhES, system ID: r_IEoU1nH54S3B
2026-10-12T04:21:04.447790Z 00O   UUID: 01a01aa6-2f91-7d2c-b24d-7e2d2752ac58
2026-10-12T04:21:04.447803Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true, FF_USE_JOB_ROUTER:true, FF_MACHINE_OPTIONS_EXPAND_ENV:true, FF_DOCKER_MACHINE_JSON_OUTPUT:true
2026-10-12T04:21:04.447868Z 00O Resolving secrets
2026-10-12T04:21:04.448133Z 00O section_start:1791778864:prepare_executor

2026-10-12T04:21:04.448142Z 00O+Preparing the "docker+machine" executor
2026-10-12T04:21:04.531895Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-10-12T04:21:04.531939Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.5.0 )
2026-10-12T04:21:04.531948Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501
2026-10-12T04:21:04.532629Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-10-12T04:21:04.532636Z 00O Pulling docker image registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501 ...
2026-10-12T04:21:05.949697Z 00O Using docker image sha256:08749606eabcea842cbd189a80b2f3d7670b949f70dfc654d45d8b81554bd837 for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:eea1152121f06d47f94871fef69559be0a87c75212f227e34e7617d1a3bbe6c3 ...
2026-10-12T04:21:07.598980Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.5.0 )
2026-10-12T04:21:07.598995Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501
2026-10-12T04:21:07.600000Z 00O Using docker image sha256:08749606eabcea842cbd189a80b2f3d7670b949f70dfc654d45d8b81554bd837 for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:eea1152121f06d47f94871fef69559be0a87c75212f227e34e7617d1a3bbe6c3 ...
2026-10-12T04:21:07.600010Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-10-12T04:21:07.600631Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-10-12T04:21:07.600637Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-10-12T04:21:12.886533Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-10-12T04:21:12.886649Z 00O section_end:1791778872:prepare_executor

2026-10-12T04:21:12.886819Z 00O+section_start:1791778872:prepare_script

2026-10-12T04:21:12.886826Z 00O+Preparing environment
2026-10-12T04:21:12.886865Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.5.0 )
2026-10-12T04:21:12.886875Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501
2026-10-12T04:21:12.887744Z 00O Using docker image sha256:08749606eabcea842cbd189a80b2f3d7670b949f70dfc654d45d8b81554bd837 for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-28a18501 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:eea1152121f06d47f94871fef69559be0a87c75212f227e34e7617d1a3bbe6c3 ...
2026-10-12T04:21:12.887754Z 00O Using effective pull policy of [always] for container sha256:08749606eabcea842cbd189a80b2f3d7670b949f70dfc654d45d8b81554bd837
2026-10-12T04:21:17.106543Z 01O Running on runner-j8vtlrhes-project-3622566-concurrent-0 via runner-j8vtlrhes-s-l-m-amd64-1791778795-af385186...
2026-10-12T04:21:17.109358Z 01O Running on CPU: INTEL(R) XEON(R) PLATINUM 8581C CPU @ 2.10GHz (avx, avx2, avx512f)
2026-10-12T04:21:17.253124Z 00O section_end:1791778877:prepare_script

2026-10-12T04:21:17.253758Z 00O+section_start:1791778877:get_sources

2026-10-12T04:21:17.253764Z 00O+Getting source from Git repository
2026-10-12T04:21:17.554660Z 01O Gitaly correlation ID: efa8ca3777814baa93112e1a488a7b75
2026-10-12T04:21:17.558901Z 01O Fetching changes...
2026-10-12T04:21:17.561507Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-10-12T04:21:17.563368Z 01O Created fresh repository.
2026-10-12T04:21:22.794043Z 01O Checking out df59dd63 as detached HEAD (ref is master)...
2026-10-12T04:21:22.964736Z 01O 
2026-10-12T04:21:22.964740Z 01O Skipping Git submodules setup
2026-10-12T04:21:22.964741Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-10-12T04:21:23.144709Z 00O section_end:1791778883:get_sources

2026-10-12T04:21:23.145396Z 00O+section_start:1791778883:download_artifacts

2026-10-12T04:21:23.145401Z 00O+Downloading artifacts
2026-10-12T04:21:23.474433Z 01O Downloading artifacts for build (17100991411)...
2026-10-12T04:21:23.705053Z 01E Direct download from storage.googleapis.com         correlation_id=e177ec5c3901478a81c2b40574ed8f04 id=17100991411 status=302 token=74_e3RZiv
2026-10-12T04:21:24.013414Z 01E Downloading artifacts from coordinator... ok        correlation_id=e177ec5c3901478a81c2b40574ed8f04 id=17100991411 status=302 token=74_e3RZiv
2026-10-12T04:21:24.021559Z 01O Downloading artifacts for mirror-packages (17100991410)...
2026-10-12T04:21:24.238992Z 01E Direct download from storage.googleapis.com         correlation_id=aedbbcbaff4d4827af4977f7f4c10bd4 id=17100991410 status=302 token=74_e3RZiv
2026-10-12T04:21:25.118928Z 01E Downloading artifacts from coordinator... ok        correlation_id=aedbbcbaff4d4827af4977f7f4c10bd4 id=17100991410 status=302 token=74_e3RZiv
2026-10-12T04:21:26.198362Z 00O section_end:1791778886:download_artifacts

2026-10-12T04:21:26.198816Z 00O+section_start:1791778886:step_script

2026-10-12T04:21:26.198824Z 00O+Executing "step_script" stage of the job script
2026-10-12T04:21:26.198834Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-10-12T04:21:26.199803Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-10-12T04:21:26.494818Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-10-12T04:21:26.500618Z 01O $ mkdir -p ~/.R
2026-10-12T04:21:26.501494Z 01O $ echo 'CFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-10-12T04:21:26.501586Z 01O $ echo 'CXXFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-10-12T04:21:26.501588Z 01O $ R CMD check --no-manual --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
2026-10-12T04:21:26.652211Z 01O * using log directory '/builds/Rdatatable/data.table/data.table.Rcheck'
2026-10-12T04:21:26.652218Z 01O * using R version 4.5.0 (2025-04-11)
2026-10-12T04:21:26.652416Z 01O * using platform: x86_64-pc-linux-gnu
2026-10-12T04:21:26.652594Z 01O * R was compiled by
2026-10-12T04:21:26.652697Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-10-12T04:21:26.652699Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-10-12T04:21:26.652836Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-10-12T04:21:26.653447Z 01O * using session charset: ASCII
2026-10-12T04:21:27.278767Z 01O * using options '--no-manual --ignore-vignettes'
2026-10-12T04:21:27.278815Z 01O * checking for file 'data.table/DESCRIPTION' ... OK
2026-10-12T04:21:27.281057Z 01O * this is package 'data.table' version '1.18.99'
2026-10-12T04:21:27.281196Z 01O * package encoding: UTF-8
2026-10-12T04:21:27.281334Z 01O * checking package namespace information ... OK
2026-10-12T04:21:27.286764Z 01O * checking package dependencies ... INFO
2026-10-12T04:21:28.215385Z 01O Packages suggested but not available for checking:
2026-10-12T04:21:28.215387Z 01O   'bit64', 'R.utils', 'xts', 'zoo', 'yaml', 'litedown'
2026-10-12T04:21:28.215388Z 01O 
2026-10-12T04:21:28.215389Z 01O Packages which this enhances but not available for checking:
2026-10-12T04:21:28.215390Z 01O   'knitr', 'xfun'
2026-10-12T04:21:28.215396Z 01O * checking if this is a source package ... OK
2026-10-12T04:21:28.217236Z 01O * checking if there is a namespace ... OK
2026-10-12T04:21:28.220187Z 01O * checking for .dll and .exe files ... OK
2026-10-12T04:21:28.220562Z 01O * checking for hidden files and directories ... OK
2026-10-12T04:21:28.222064Z 01O * checking for portable file names ... OK
2026-10-12T04:21:28.225164Z 01O * checking for sufficient/correct file permissions ... OK
2026-10-12T04:21:28.226354Z 01O * checking whether package 'data.table' can be installed ... OK
2026-10-12T04:21:39.460444Z 01O * used C compiler: 'gcc (Debian 14.2.0-19) 14.2.0'
2026-10-12T04:21:39.460557Z 01O * checking installed package size ... INFO
2026-10-12T04:21:39.463692Z 01O   installed size is  7.7Mb
2026-10-12T04:21:39.464193Z 01O   sub-directories of 1Mb or more:
2026-10-12T04:21:39.464758Z 01O     doc     1.1Mb
2026-10-12T04:21:39.464759Z 01O     libs    1.2Mb
2026-10-12T04:21:39.464759Z 01O     po      1.7Mb
2026-10-12T04:21:39.464760Z 01O     tests   2.2Mb
2026-10-12T04:21:39.464807Z 01O * checking package directory ... OK
2026-10-12T04:21:39.465026Z 01O * checking DESCRIPTION meta-information ... OK
2026-10-12T04:21:40.121563Z 01O * checking top-level files ... OK
2026-10-12T04:21:40.122060Z 01O * checking for left-over files ... OK
2026-10-12T04:21:40.123293Z 01O * checking index information ... OK
2026-10-12T04:21:40.173794Z 01O * checking package subdirectories ... OK
2026-10-12T04:21:40.272136Z 01O * checking code files for non-ASCII characters ... OK
2026-10-12T04:21:40.310115Z 01O * checking R files for syntax errors ... WARNING
2026-10-12T04:21:40.365598Z 01O Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
2026-10-12T04:21:40.365600Z 01O   OS reports request to set locale to "en_US.UTF-8" cannot be honored
2026-10-12T04:21:40.365603Z 01O * checking whether the package can be loaded ... OK
2026-10-12T04:21:40.525582Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-10-12T04:21:40.654303Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-10-12T04:21:40.778659Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-10-12T04:21:40.908842Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-10-12T04:21:41.078916Z 01O * checking loading without being on the library search path ... OK
2026-10-12T04:21:41.405124Z 01O * checking whether startup messages can be suppressed ... OK
2026-10-12T04:21:41.564568Z 01O * checking dependencies in R code ... OK
2026-10-12T04:21:42.070714Z 01O * checking S3 generic/method consistency ... OK
2026-10-12T04:21:42.357983Z 01O * checking replacement functions ... OK
2026-10-12T04:21:42.519598Z 01O * checking foreign function calls ... OK
2026-10-12T04:21:43.131114Z 01O * checking R code for possible problems ... OK
2026-10-12T04:21:51.929447Z 01O * checking Rd files ... OK
2026-10-12T04:21:52.418289Z 01O * checking Rd metadata ... OK
2026-10-12T04:21:52.451240Z 01O * checking Rd cross-references ... INFO
2026-10-12T04:21:55.472044Z 01O Packages unavailable to check Rd xrefs: 'bit64', 'yaml'
2026-10-12T04:21:55.472050Z 01O * checking for missing documentation entries ... OK
2026-10-12T04:21:55.671560Z 01O * checking for code/documentation mismatches ... OK
2026-10-12T04:21:56.492265Z 01O * checking Rd \usage sections ... OK
2026-10-12T04:21:57.232932Z 01O * checking Rd contents ... OK
2026-10-12T04:21:57.594979Z 01O * checking for unstated dependencies in examples ... OK
2026-10-12T04:21:57.982724Z 01O * checking line endings in shell scripts ... OK
2026-10-12T04:21:57.983113Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-10-12T04:21:57.997247Z 01O * checking line endings in Makefiles ... OK
2026-10-12T04:21:57.997543Z 01O * checking compilation flags in Makevars ... OK
2026-10-12T04:21:58.041374Z 01O * checking for GNU extensions in Makefiles ... OK
2026-10-12T04:21:58.041875Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-10-12T04:21:58.042706Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-10-12T04:21:58.045873Z 01O * checking compiled code ... NOTE
2026-10-12T04:21:58.102647Z 01O File 'data.table/libs/data.table.so':
2026-10-12T04:21:58.102648Z 01O   Found non-API calls to R: 'IS_GROWABLE', 'LEVELS', 'R_GetConnection',
2026-10-12T04:21:58.102648Z 01O     'R_ReadConnection', 'SETLENGTH', 'SET_GROWABLE_BIT',
2026-10-12T04:21:58.102675Z 01O     'SET_TRUELENGTH', 'TRUELENGTH', 'XTRUELENGTH'
2026-10-12T04:21:58.103018Z 01O 
2026-10-12T04:21:58.103019Z 01O Compiled code should not call non-API entry points in R.
2026-10-12T04:21:58.103020Z 01O 
2026-10-12T04:21:58.103020Z 01O See 'Writing portable packages' in the 'Writing R Extensions' manual,
2026-10-12T04:21:58.103021Z 01O and section 'Moving into C API compliance' for issues with the use of
2026-10-12T04:21:58.103021Z 01O non-API entry points.
2026-10-12T04:21:58.103384Z 01O * checking installed files from 'inst/doc' ... OK
2026-10-12T04:21:58.241588Z 01O * checking files in 'vignettes' ... SKIPPED
2026-10-12T04:21:58.241791Z 01O * checking examples ... OK
2026-10-12T04:22:01.282994Z 01O * checking for unstated dependencies in 'tests' ... OK
2026-10-12T04:22:01.337528Z 01O * checking tests ...
2026-10-12T04:22:01.466235Z 01E   Running 'S4.R'
2026-10-12T04:22:01.737799Z 01E   Running 'autoprint.R'
2026-10-12T04:22:01.943761Z 01E   Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
2026-10-12T04:22:01.949038Z 01E   Running 'froll.R'
2026-10-12T04:25:50.420468Z 01E   Running 'litedown.R'
2026-10-12T04:25:50.553693Z 01E   Running 'main.R'
2026-10-12T04:26:22.247635Z 01E   Running 'mergelist.R'
2026-10-12T04:26:23.681023Z 01E   Running 'nafill.R'
2026-10-12T04:26:24.068020Z 01E   Running 'optimize.R'
2026-10-12T04:26:25.240886Z 01E   Running 'other.R'
2026-10-12T04:26:25.429011Z 01E   Running 'programming.R'
2026-10-12T04:26:25.971554Z 01E   Running 'self.R'
2026-10-12T04:26:26.177637Z 01E   Running 'types.R'
2026-10-12T04:26:26.396378Z 01O  OK
2026-10-12T04:26:26.396670Z 01O * DONE
2026-10-12T04:26:26.397008Z 01E 
2026-10-12T04:26:26.397124Z 01O Status: 1 WARNING, 1 NOTE
2026-10-12T04:26:26.397242Z 01E See
2026-10-12T04:26:26.397245Z 01E   '/builds/Rdatatable/data.table/data.table.Rcheck/00check.log'
2026-10-12T04:26:26.397246Z 01E for details.
2026-10-12T04:26:26.397270Z 01E 
2026-10-12T04:26:26.561676Z 00O section_end:1791779186:step_script

2026-10-12T04:26:26.562012Z 00O+section_start:1791779186:after_script

2026-10-12T04:26:26.562017Z 00O+Running after_script
2026-10-12T04:26:26.855866Z 01O Running after script...
2026-10-12T04:26:26.855892Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-10-12T04:26:26.856668Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-10-12T04:26:26.856676Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-10-12T04:26:26.856679Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-10-12T04:26:26.856747Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-10-12T04:26:26.999244Z 00O section_end:1791779186:after_script

2026-10-12T04:26:26.999893Z 00O+section_start:1791779186:upload_artifacts_on_success

2026-10-12T04:26:26.999898Z 00O+Uploading artifacts for successful job
2026-10-12T04:26:27.336155Z 01O Uploading artifacts...
2026-10-12T04:26:27.387650Z 01E bus/test-lin-rel-vanilla: found 701 matching artifact files and directories 
2026-10-12T04:26:28.668848Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=1a6ac287834243178397e104fef48e1d id=17100991413 status=201 token=74_e3RZiv
2026-10-12T04:26:28.823492Z 00O section_end:1791779188:upload_artifacts_on_success

2026-10-12T04:26:28.823860Z 00O+section_start:1791779188:cleanup_file_variables

2026-10-12T04:26:28.823865Z 00O+Cleaning up project directory and file based variables
2026-10-12T04:26:29.267034Z 00O section_end:1791779189:cleanup_file_variables

2026-10-12T04:26:29.277435Z 00O Job succeeded