2026-05-29T04:21:19.069463Z 00O Running with gitlab-runner 19.0.0~pre.1138.ga0a1e0e8 (a0a1e0e8)
2026-05-29T04:21:19.069476Z 00O   on blue-5.saas-linux-medium-amd64.runners-manager.gitlab.com/default nEW2M-oDE, system ID: s_fe9b8d77dc4b
2026-05-29T04:21:19.069481Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true
2026-05-29T04:21:19.069500Z 00O Resolving secrets
2026-05-29T04:21:19.069623Z 00O section_start:1780028479:prepare_executor
2026-05-29T04:21:19.069623Z 00O+Preparing the "docker+machine" executor
2026-05-29T04:21:19.195555Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-05-29T04:21:23.010991Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-05-29T04:21:23.011605Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-05-29T04:21:23.011612Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-05-29T04:21:28.237169Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-05-29T04:21:28.237245Z 00O section_end:1780028488:prepare_executor
2026-05-29T04:21:28.237246Z 00O+section_start:1780028488:prepare_script
2026-05-29T04:21:28.237319Z 00O+Preparing environment
2026-05-29T04:21:28.237973Z 00O Using effective pull policy of [always] for container sha256:a0ee41b797d89ca4785fb7480bebe29760f2651fae60884fdb6f2559e95d3279
2026-05-29T04:21:32.460337Z 01O Running on runner-new2m-ode-project-3622566-concurrent-0 via runner-new2m-ode-s-l-m-amd64-1780028388-366c9331...
2026-05-29T04:21:32.594737Z 00O section_end:1780028492:prepare_script
2026-05-29T04:21:32.594741Z 00O+section_start:1780028492:get_sources
2026-05-29T04:21:32.595292Z 00O+Getting source from Git repository
2026-05-29T04:21:32.898441Z 01O Gitaly correlation ID: c390d3249b6c449da039da2c33f84bf5
2026-05-29T04:21:32.903450Z 01O Fetching changes...
2026-05-29T04:21:32.905869Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-05-29T04:21:32.907723Z 01O Created fresh repository.
2026-05-29T04:21:38.223706Z 01O Checking out 1b998b10 as detached HEAD (ref is master)...
2026-05-29T04:21:38.397750Z 01O 
2026-05-29T04:21:38.397753Z 01O Skipping Git submodules setup
2026-05-29T04:21:38.397754Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-05-29T04:21:38.587176Z 00O section_end:1780028498:get_sources
2026-05-29T04:21:38.587181Z 00O+section_start:1780028498:download_artifacts
2026-05-29T04:21:38.587876Z 00O+Downloading artifacts
2026-05-29T04:21:38.915469Z 01O Downloading artifacts for mirror-packages (14595616712)...
2026-05-29T04:21:39.103162Z 01E Direct download from storage.googleapis.com         correlation_id=7863b4b104394034a2bbc4a850e69cb8 id=14595616712 status=302 token=6f_Lqx2zg
2026-05-29T04:21:39.656502Z 01E Downloading artifacts from coordinator... ok        correlation_id=7863b4b104394034a2bbc4a850e69cb8 id=14595616712 status=302 token=6f_Lqx2zg
2026-05-29T04:21:40.248941Z 01O Downloading artifacts for build (14595616713)...
2026-05-29T04:21:40.470194Z 01E Direct download from storage.googleapis.com         correlation_id=18fbcf38ce224d80a96abd8e7898ea8a id=14595616713 status=302 token=6f_Lqx2zg
2026-05-29T04:21:40.684568Z 01E Downloading artifacts from coordinator... ok        correlation_id=18fbcf38ce224d80a96abd8e7898ea8a id=14595616713 status=302 token=6f_Lqx2zg
2026-05-29T04:21:41.328673Z 00O section_end:1780028501:download_artifacts
2026-05-29T04:21:41.328679Z 00O+section_start:1780028501:step_script
2026-05-29T04:21:41.329078Z 00O+Executing "step_script" stage of the job script
2026-05-29T04:21:41.329096Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-05-29T04:21:41.329974Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-05-29T04:21:41.612922Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-05-29T04:21:41.618994Z 01O $ mkdir -p ~/.R
2026-05-29T04:21:41.620023Z 01O $ echo 'CFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-05-29T04:21:41.620029Z 01O $ echo 'CXXFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-05-29T04:21:41.620123Z 01O $ R CMD check --no-manual --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
2026-05-29T04:21:41.779563Z 01O * using log directory '/builds/Rdatatable/data.table/data.table.Rcheck'
2026-05-29T04:21:41.779716Z 01O * using R version 4.5.0 (2025-04-11)
2026-05-29T04:21:41.779849Z 01O * using platform: x86_64-pc-linux-gnu
2026-05-29T04:21:41.779998Z 01O * R was compiled by
2026-05-29T04:21:41.780123Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-05-29T04:21:41.780123Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-05-29T04:21:41.780243Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-05-29T04:21:41.780848Z 01O * using session charset: ASCII
2026-05-29T04:21:42.402330Z 01O * using options '--no-manual --ignore-vignettes'
2026-05-29T04:21:42.402518Z 01O * checking for file 'data.table/DESCRIPTION' ... OK
2026-05-29T04:21:42.404846Z 01O * this is package 'data.table' version '1.18.99'
2026-05-29T04:21:42.404926Z 01O * package encoding: UTF-8
2026-05-29T04:21:42.405085Z 01O * checking package namespace information ... OK
2026-05-29T04:21:42.411036Z 01O * checking package dependencies ... INFO
2026-05-29T04:21:43.341834Z 01O Packages suggested but not available for checking:
2026-05-29T04:21:43.341836Z 01O   'bit64', 'R.utils', 'xts', 'zoo', 'yaml', 'litedown'
2026-05-29T04:21:43.341836Z 01O 
2026-05-29T04:21:43.341837Z 01O Packages which this enhances but not available for checking:
2026-05-29T04:21:43.341837Z 01O   'knitr', 'xfun'
2026-05-29T04:21:43.341877Z 01O * checking if this is a source package ... OK
2026-05-29T04:21:43.343815Z 01O * checking if there is a namespace ... OK
2026-05-29T04:21:43.346501Z 01O * checking for .dll and .exe files ... OK
2026-05-29T04:21:43.346832Z 01O * checking for hidden files and directories ... OK
2026-05-29T04:21:43.348313Z 01O * checking for portable file names ... OK
2026-05-29T04:21:43.351397Z 01O * checking for sufficient/correct file permissions ... OK
2026-05-29T04:21:43.352558Z 01O * checking whether package 'data.table' can be installed ... OK
2026-05-29T04:21:54.523758Z 01O * used C compiler: 'gcc (Debian 14.2.0-19) 14.2.0'
2026-05-29T04:21:54.524026Z 01O * checking installed package size ... INFO
2026-05-29T04:21:54.527298Z 01O   installed size is  7.6Mb
2026-05-29T04:21:54.527921Z 01O   sub-directories of 1Mb or more:
2026-05-29T04:21:54.528298Z 01O     doc     1.1Mb
2026-05-29T04:21:54.528299Z 01O     libs    1.2Mb
2026-05-29T04:21:54.528299Z 01O     po      1.7Mb
2026-05-29T04:21:54.528300Z 01O     tests   2.2Mb
2026-05-29T04:21:54.528490Z 01O * checking package directory ... OK
2026-05-29T04:21:54.528751Z 01O * checking DESCRIPTION meta-information ... OK
2026-05-29T04:21:55.191502Z 01O * checking top-level files ... OK
2026-05-29T04:21:55.192003Z 01O * checking for left-over files ... OK
2026-05-29T04:21:55.193358Z 01O * checking index information ... OK
2026-05-29T04:21:55.245007Z 01O * checking package subdirectories ... OK
2026-05-29T04:21:55.344585Z 01O * checking code files for non-ASCII characters ... OK
2026-05-29T04:21:55.385216Z 01O * checking R files for syntax errors ... WARNING
2026-05-29T04:21:55.444826Z 01O Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
2026-05-29T04:21:55.444827Z 01O   OS reports request to set locale to "en_US.UTF-8" cannot be honored
2026-05-29T04:21:55.444911Z 01O * checking whether the package can be loaded ... OK
2026-05-29T04:21:55.615036Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-05-29T04:21:55.748237Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-05-29T04:21:55.876712Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-05-29T04:21:56.009925Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-05-29T04:21:56.189186Z 01O * checking loading without being on the library search path ... OK
2026-05-29T04:21:56.536745Z 01O * checking whether startup messages can be suppressed ... OK
2026-05-29T04:21:56.714968Z 01O * checking dependencies in R code ... OK
2026-05-29T04:21:57.250815Z 01O * checking S3 generic/method consistency ... OK
2026-05-29T04:21:57.549406Z 01O * checking replacement functions ... OK
2026-05-29T04:21:57.714154Z 01O * checking foreign function calls ... OK
2026-05-29T04:21:58.331314Z 01O * checking R code for possible problems ... OK
2026-05-29T04:22:06.858511Z 01O * checking Rd files ... OK
2026-05-29T04:22:07.353351Z 01O * checking Rd metadata ... OK
2026-05-29T04:22:07.387228Z 01O * checking Rd cross-references ... INFO
2026-05-29T04:22:10.655519Z 01O Packages unavailable to check Rd xrefs: 'bit64', 'yaml'
2026-05-29T04:22:10.655529Z 01O * checking for missing documentation entries ... OK
2026-05-29T04:22:10.852852Z 01O * checking for code/documentation mismatches ... OK
2026-05-29T04:22:11.668351Z 01O * checking Rd \usage sections ... OK
2026-05-29T04:22:12.386872Z 01O * checking Rd contents ... OK
2026-05-29T04:22:12.742261Z 01O * checking for unstated dependencies in examples ... OK
2026-05-29T04:22:13.124096Z 01O * checking line endings in shell scripts ... OK
2026-05-29T04:22:13.124422Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-05-29T04:22:13.139589Z 01O * checking line endings in Makefiles ... OK
2026-05-29T04:22:13.139894Z 01O * checking compilation flags in Makevars ... OK
2026-05-29T04:22:13.182943Z 01O * checking for GNU extensions in Makefiles ... OK
2026-05-29T04:22:13.183592Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-05-29T04:22:13.184502Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-05-29T04:22:13.187707Z 01O * checking compiled code ... NOTE
2026-05-29T04:22:13.243248Z 01O File 'data.table/libs/data_table.so':
2026-05-29T04:22:13.243248Z 01O   Found non-API calls to R: 'IS_GROWABLE', 'LEVELS', 'R_GetConnection',
2026-05-29T04:22:13.243249Z 01O     'R_ReadConnection', 'SETLENGTH', 'SET_GROWABLE_BIT',
2026-05-29T04:22:13.243249Z 01O     'SET_TRUELENGTH', 'TRUELENGTH', 'XTRUELENGTH'
2026-05-29T04:22:13.243685Z 01O 
2026-05-29T04:22:13.243686Z 01O Compiled code should not call non-API entry points in R.
2026-05-29T04:22:13.243687Z 01O 
2026-05-29T04:22:13.243687Z 01O See 'Writing portable packages' in the 'Writing R Extensions' manual,
2026-05-29T04:22:13.243688Z 01O and section 'Moving into C API compliance' for issues with the use of
2026-05-29T04:22:13.243688Z 01O non-API entry points.
2026-05-29T04:22:13.243923Z 01O * checking installed files from 'inst/doc' ... OK
2026-05-29T04:22:13.385185Z 01O * checking files in 'vignettes' ... SKIPPED
2026-05-29T04:22:13.385409Z 01O * checking examples ... OK
2026-05-29T04:22:16.417210Z 01O * checking for unstated dependencies in 'tests' ... OK
2026-05-29T04:22:16.471683Z 01O * checking tests ...
2026-05-29T04:22:16.595500Z 01E   Running 'S4.R'
2026-05-29T04:22:16.864381Z 01E   Running 'autoprint.R'
2026-05-29T04:22:17.068361Z 01E   Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
2026-05-29T04:22:17.073809Z 01E   Running 'froll.R'
2026-05-29T04:25:54.992033Z 01E   Running 'litedown.R'
2026-05-29T04:25:55.119585Z 01E   Running 'main.R'
2026-05-29T04:26:22.921225Z 01E   Running 'mergelist.R'
2026-05-29T04:26:24.221758Z 01E   Running 'nafill.R'
2026-05-29T04:26:24.563735Z 01E   Running 'optimize.R'
2026-05-29T04:26:25.581228Z 01E   Running 'other.R'
2026-05-29T04:26:25.758178Z 01E   Running 'programming.R'
2026-05-29T04:26:26.248217Z 01E   Running 'types.R'
2026-05-29T04:26:26.453048Z 01O  OK
2026-05-29T04:26:26.453413Z 01O * DONE
2026-05-29T04:26:26.453749Z 01E 
2026-05-29T04:26:26.453829Z 01O Status: 1 WARNING, 1 NOTE
2026-05-29T04:26:26.453967Z 01E See
2026-05-29T04:26:26.453967Z 01E   '/builds/Rdatatable/data.table/data.table.Rcheck/00check.log'
2026-05-29T04:26:26.453968Z 01E for details.
2026-05-29T04:26:26.454023Z 01E 
2026-05-29T04:26:26.611465Z 00O section_end:1780028786:step_script
2026-05-29T04:26:26.611468Z 00O+section_start:1780028786:after_script
2026-05-29T04:26:26.611909Z 00O+Running after_script
2026-05-29T04:26:26.893597Z 01O Running after script...
2026-05-29T04:26:26.893618Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-05-29T04:26:26.894459Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-05-29T04:26:26.894459Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-05-29T04:26:26.894512Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-05-29T04:26:26.894517Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-05-29T04:26:27.033956Z 00O section_end:1780028787:after_script
2026-05-29T04:26:27.033959Z 00O+section_start:1780028787:upload_artifacts_on_success
2026-05-29T04:26:27.034623Z 00O+Uploading artifacts for successful job
2026-05-29T04:26:27.356402Z 01O Uploading artifacts...
2026-05-29T04:26:27.405417Z 01E bus/test-lin-rel-vanilla: found 694 matching artifact files and directories 
2026-05-29T04:26:29.488839Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=749dcc3c83624da498d39ed48668efb4 id=14595616715 status=201 token=6f_Lqx2zg
2026-05-29T04:26:29.642845Z 00O section_end:1780028789:upload_artifacts_on_success
2026-05-29T04:26:29.642854Z 00O+section_start:1780028789:cleanup_file_variables
2026-05-29T04:26:29.642947Z 00O+Cleaning up project directory and file based variables
2026-05-29T04:26:30.048644Z 00O section_end:1780028790:cleanup_file_variables
2026-05-29T04:26:30.048648Z 00O+
2026-05-29T04:26:30.059270Z 00O Job succeeded