2026-07-13T04:20:57.870403Z 00O Running with gitlab-runner 19.0.0~pre.1138.ga0a1e0e8 (a0a1e0e8)
2026-07-13T04:20:57.870413Z 00O   on blue-3.saas-linux-medium-amd64.runners-manager.gitlab.com/default U4xQPDyhm, system ID: s_b59597d5b921
2026-07-13T04:20:57.870418Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true
2026-07-13T04:20:57.870435Z 00O Resolving secrets
2026-07-13T04:20:57.870563Z 00O section_start:1783916457:prepare_executor
2026-07-13T04:20:57.870564Z 00O+Preparing the "docker+machine" executor
2026-07-13T04:20:57.994078Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-07-13T04:21:00.709337Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-07-13T04:21:00.709766Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-07-13T04:21:00.709775Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-07-13T04:21:03.973514Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-07-13T04:21:03.973608Z 00O section_end:1783916463:prepare_executor
2026-07-13T04:21:03.973610Z 00O+section_start:1783916463:prepare_script
2026-07-13T04:21:03.973728Z 00O+Preparing environment
2026-07-13T04:21:03.974463Z 00O Using effective pull policy of [always] for container sha256:116a2575f080b0add5761236d757e06887dda2874deb1cb9e0dec309c067c0d7
2026-07-13T04:21:08.126509Z 01O Running on runner-u4xqpdyhm-project-3622566-concurrent-0 via runner-u4xqpdyhm-s-l-m-amd64-1783916430-2ba0be2d...
2026-07-13T04:21:08.241418Z 00O section_end:1783916468:prepare_script
2026-07-13T04:21:08.241426Z 00O+section_start:1783916468:get_sources
2026-07-13T04:21:08.241971Z 00O+Getting source from Git repository
2026-07-13T04:21:08.462974Z 01O Gitaly correlation ID: 069b76ca56144621ad6745d50c885109
2026-07-13T04:21:08.465835Z 01O Fetching changes...
2026-07-13T04:21:08.467510Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-07-13T04:21:08.468650Z 01O Created fresh repository.
2026-07-13T04:21:11.961276Z 01O Checking out f55ed355 as detached HEAD (ref is master)...
2026-07-13T04:21:12.062257Z 01O 
2026-07-13T04:21:12.062261Z 01O Skipping Git submodules setup
2026-07-13T04:21:12.062262Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-07-13T04:21:12.222018Z 00O section_end:1783916472:get_sources
2026-07-13T04:21:12.222021Z 00O+section_start:1783916472:download_artifacts
2026-07-13T04:21:12.222691Z 00O+Downloading artifacts
2026-07-13T04:21:12.456449Z 01O Downloading artifacts for build (15308171288)...
2026-07-13T04:21:12.652659Z 01E Direct download from storage.googleapis.com         correlation_id=d15e4b5182854a7b94e462a4bb4e95f4 id=15308171288 status=302 token=71_kHPsS2
2026-07-13T04:21:12.910547Z 01E Downloading artifacts from coordinator... ok        correlation_id=d15e4b5182854a7b94e462a4bb4e95f4 id=15308171288 status=302 token=71_kHPsS2
2026-07-13T04:21:12.919469Z 01O Downloading artifacts for mirror-packages (15308171287)...
2026-07-13T04:21:13.369066Z 01E Direct download from storage.googleapis.com         correlation_id=491a843db18447dcb8fa04ea656b3fb1 id=15308171287 status=302 token=71_kHPsS2
2026-07-13T04:21:14.106352Z 01E Downloading artifacts from coordinator... ok        correlation_id=491a843db18447dcb8fa04ea656b3fb1 id=15308171287 status=302 token=71_kHPsS2
2026-07-13T04:21:15.216818Z 00O section_end:1783916475:download_artifacts
2026-07-13T04:21:15.216822Z 00O+section_start:1783916475:step_script
2026-07-13T04:21:15.217238Z 00O+Executing "step_script" stage of the job script
2026-07-13T04:21:15.217261Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-07-13T04:21:15.217848Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-07-13T04:21:15.418205Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-07-13T04:21:15.421735Z 01O $ mkdir -p ~/.R
2026-07-13T04:21:15.422260Z 01O $ echo 'CFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-07-13T04:21:15.422309Z 01O $ echo 'CXXFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-07-13T04:21:15.422330Z 01O $ R CMD check --no-manual --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
2026-07-13T04:21:15.517083Z 01O * using log directory '/builds/Rdatatable/data.table/data.table.Rcheck'
2026-07-13T04:21:15.517091Z 01O * using R version 4.5.0 (2025-04-11)
2026-07-13T04:21:15.517159Z 01O * using platform: x86_64-pc-linux-gnu
2026-07-13T04:21:15.517246Z 01O * R was compiled by
2026-07-13T04:21:15.517297Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-07-13T04:21:15.517297Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-07-13T04:21:15.517397Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-07-13T04:21:15.517758Z 01O * using session charset: ASCII
2026-07-13T04:21:15.933181Z 01O * using options '--no-manual --ignore-vignettes'
2026-07-13T04:21:15.933282Z 01O * checking for file 'data.table/DESCRIPTION' ... OK
2026-07-13T04:21:15.934861Z 01O * this is package 'data.table' version '1.18.99'
2026-07-13T04:21:15.934957Z 01O * package encoding: UTF-8
2026-07-13T04:21:15.935107Z 01O * checking package namespace information ... OK
2026-07-13T04:21:15.939207Z 01O * checking package dependencies ... INFO
2026-07-13T04:21:16.689798Z 01O Packages suggested but not available for checking:
2026-07-13T04:21:16.689799Z 01O   'bit64', 'R.utils', 'xts', 'zoo', 'yaml', 'litedown'
2026-07-13T04:21:16.689800Z 01O 
2026-07-13T04:21:16.689800Z 01O Packages which this enhances but not available for checking:
2026-07-13T04:21:16.689801Z 01O   'knitr', 'xfun'
2026-07-13T04:21:16.689809Z 01O * checking if this is a source package ... OK
2026-07-13T04:21:16.691256Z 01O * checking if there is a namespace ... OK
2026-07-13T04:21:16.693093Z 01O * checking for .dll and .exe files ... OK
2026-07-13T04:21:16.693342Z 01O * checking for hidden files and directories ... OK
2026-07-13T04:21:16.694365Z 01O * checking for portable file names ... OK
2026-07-13T04:21:16.696366Z 01O * checking for sufficient/correct file permissions ... OK
2026-07-13T04:21:16.697100Z 01O * checking whether package 'data.table' can be installed ... OK
2026-07-13T04:21:23.863548Z 01O * used C compiler: 'gcc (Debian 14.2.0-19) 14.2.0'
2026-07-13T04:21:23.863556Z 01O * checking installed package size ... INFO
2026-07-13T04:21:23.865572Z 01O   installed size is  7.6Mb
2026-07-13T04:21:23.866038Z 01O   sub-directories of 1Mb or more:
2026-07-13T04:21:23.866310Z 01O     doc     1.1Mb
2026-07-13T04:21:23.866310Z 01O     libs    1.2Mb
2026-07-13T04:21:23.866311Z 01O     po      1.7Mb
2026-07-13T04:21:23.866311Z 01O     tests   2.2Mb
2026-07-13T04:21:23.866423Z 01O * checking package directory ... OK
2026-07-13T04:21:23.866611Z 01O * checking DESCRIPTION meta-information ... OK
2026-07-13T04:21:24.264682Z 01O * checking top-level files ... OK
2026-07-13T04:21:24.264997Z 01O * checking for left-over files ... OK
2026-07-13T04:21:24.266056Z 01O * checking index information ... OK
2026-07-13T04:21:24.298117Z 01O * checking package subdirectories ... OK
2026-07-13T04:21:24.359743Z 01O * checking code files for non-ASCII characters ... OK
2026-07-13T04:21:24.384282Z 01O * checking R files for syntax errors ... WARNING
2026-07-13T04:21:24.419776Z 01O Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
2026-07-13T04:21:24.419777Z 01O   OS reports request to set locale to "en_US.UTF-8" cannot be honored
2026-07-13T04:21:24.419871Z 01O * checking whether the package can be loaded ... OK
2026-07-13T04:21:24.525438Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-07-13T04:21:24.607658Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-07-13T04:21:24.692991Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-07-13T04:21:24.777220Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-07-13T04:21:24.884196Z 01O * checking loading without being on the library search path ... OK
2026-07-13T04:21:25.097178Z 01O * checking whether startup messages can be suppressed ... OK
2026-07-13T04:21:25.201113Z 01O * checking dependencies in R code ... OK
2026-07-13T04:21:25.567044Z 01O * checking S3 generic/method consistency ... OK
2026-07-13T04:21:25.755056Z 01O * checking replacement functions ... OK
2026-07-13T04:21:25.862962Z 01O * checking foreign function calls ... OK
2026-07-13T04:21:26.280005Z 01O * checking R code for possible problems ... OK
2026-07-13T04:21:31.664925Z 01O * checking Rd files ... OK
2026-07-13T04:21:31.978030Z 01O * checking Rd metadata ... OK
2026-07-13T04:21:31.998830Z 01O * checking Rd cross-references ... INFO
2026-07-13T04:21:35.383988Z 01O Packages unavailable to check Rd xrefs: 'bit64', 'yaml'
2026-07-13T04:21:35.383990Z 01O * checking for missing documentation entries ... OK
2026-07-13T04:21:35.511355Z 01O * checking for code/documentation mismatches ... OK
2026-07-13T04:21:36.067827Z 01O * checking Rd \usage sections ... OK
2026-07-13T04:21:36.585323Z 01O * checking Rd contents ... OK
2026-07-13T04:21:36.832658Z 01O * checking for unstated dependencies in examples ... OK
2026-07-13T04:21:37.069134Z 01O * checking line endings in shell scripts ... OK
2026-07-13T04:21:37.069397Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-07-13T04:21:37.079158Z 01O * checking line endings in Makefiles ... OK
2026-07-13T04:21:37.079356Z 01O * checking compilation flags in Makevars ... OK
2026-07-13T04:21:37.105842Z 01O * checking for GNU extensions in Makefiles ... OK
2026-07-13T04:21:37.106276Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-07-13T04:21:37.106794Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-07-13T04:21:37.108906Z 01O * checking compiled code ... NOTE
2026-07-13T04:21:37.142518Z 01O File 'data.table/libs/data.table.so':
2026-07-13T04:21:37.142518Z 01O   Found non-API calls to R: 'IS_GROWABLE', 'LEVELS', 'R_GetConnection',
2026-07-13T04:21:37.142519Z 01O     'R_ReadConnection', 'SETLENGTH', 'SET_GROWABLE_BIT',
2026-07-13T04:21:37.142520Z 01O     'SET_TRUELENGTH', 'TRUELENGTH', 'XTRUELENGTH'
2026-07-13T04:21:37.142858Z 01O 
2026-07-13T04:21:37.142858Z 01O Compiled code should not call non-API entry points in R.
2026-07-13T04:21:37.142859Z 01O 
2026-07-13T04:21:37.142859Z 01O See 'Writing portable packages' in the 'Writing R Extensions' manual,
2026-07-13T04:21:37.142860Z 01O and section 'Moving into C API compliance' for issues with the use of
2026-07-13T04:21:37.142860Z 01O non-API entry points.
2026-07-13T04:21:37.143030Z 01O * checking installed files from 'inst/doc' ... OK
2026-07-13T04:21:37.229270Z 01O * checking files in 'vignettes' ... SKIPPED
2026-07-13T04:21:37.229424Z 01O * checking examples ... OK
2026-07-13T04:21:39.665036Z 01O * checking for unstated dependencies in 'tests' ... OK
2026-07-13T04:21:39.699106Z 01O * checking tests ...
2026-07-13T04:21:39.778660Z 01E   Running 'S4.R'
2026-07-13T04:21:39.950422Z 01E   Running 'autoprint.R'
2026-07-13T04:21:40.080978Z 01E   Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
2026-07-13T04:21:40.084482Z 01E   Running 'froll.R'
2026-07-13T04:24:02.346619Z 01E   Running 'litedown.R'
2026-07-13T04:24:02.423838Z 01E   Running 'main.R'
2026-07-13T04:24:21.467837Z 01E   Running 'mergelist.R'
2026-07-13T04:24:22.185253Z 01E   Running 'nafill.R'
2026-07-13T04:24:22.384156Z 01E   Running 'optimize.R'
2026-07-13T04:24:22.980381Z 01E   Running 'other.R'
2026-07-13T04:24:23.086775Z 01E   Running 'programming.R'
2026-07-13T04:24:23.389485Z 01E   Running 'types.R'
2026-07-13T04:24:23.513667Z 01O  OK
2026-07-13T04:24:23.513904Z 01O * DONE
2026-07-13T04:24:23.514184Z 01E 
2026-07-13T04:24:23.514259Z 01O Status: 1 WARNING, 1 NOTE
2026-07-13T04:24:23.514370Z 01E See
2026-07-13T04:24:23.514371Z 01E   '/builds/Rdatatable/data.table/data.table.Rcheck/00check.log'
2026-07-13T04:24:23.514372Z 01E for details.
2026-07-13T04:24:23.514398Z 01E 
2026-07-13T04:24:23.640138Z 00O section_end:1783916663:step_script
2026-07-13T04:24:23.640142Z 00O+section_start:1783916663:after_script
2026-07-13T04:24:23.640529Z 00O+Running after_script
2026-07-13T04:24:23.844669Z 01O Running after script...
2026-07-13T04:24:23.844696Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-07-13T04:24:23.845108Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-07-13T04:24:23.845110Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-07-13T04:24:23.845137Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-07-13T04:24:23.845137Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-07-13T04:24:23.958397Z 00O section_end:1783916663:after_script
2026-07-13T04:24:23.958401Z 00O+section_start:1783916663:upload_artifacts_on_success
2026-07-13T04:24:23.959121Z 00O+Uploading artifacts for successful job
2026-07-13T04:24:24.178891Z 01O Uploading artifacts...
2026-07-13T04:24:24.207298Z 01E bus/test-lin-rel-vanilla: found 696 matching artifact files and directories 
2026-07-13T04:24:25.788047Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=b02a2b6c98594c2085e5d08899407226 id=15308171290 status=201 token=71_kHPsS2
2026-07-13T04:24:25.905342Z 00O section_end:1783916665:upload_artifacts_on_success
2026-07-13T04:24:25.905346Z 00O+section_start:1783916665:cleanup_file_variables
2026-07-13T04:24:25.905430Z 00O+Cleaning up project directory and file based variables
2026-07-13T04:24:26.222175Z 00O section_end:1783916666:cleanup_file_variables
2026-07-13T04:24:26.222179Z 00O+
2026-07-13T04:24:26.228332Z 00O Job succeeded