2026-02-26T04:21:39.746188Z 00O Running with gitlab-runner 18.9.0~pre.607.g1fd8d947 (1fd8d947)
2026-02-26T04:21:39.746198Z 00O   on green-5.saas-linux-medium-amd64.runners-manager.gitlab.com/default g2po1APsN, system ID: s_dcb821077a82
2026-02-26T04:21:39.746217Z 00O Resolving secrets
2026-02-26T04:21:39.746332Z 00O section_start:1772079699:prepare_executor
2026-02-26T04:21:39.746333Z 00O+Preparing the "docker+machine" executor
2026-02-26T04:21:39.880959Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-02-26T04:21:43.898789Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-02-26T04:21:43.899513Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-02-26T04:21:43.899523Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-02-26T04:21:49.821928Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-02-26T04:21:49.822000Z 00O section_end:1772079709:prepare_executor
2026-02-26T04:21:49.822001Z 00O+section_start:1772079709:prepare_script
2026-02-26T04:21:49.822075Z 00O+Preparing environment
2026-02-26T04:21:49.822919Z 00O Using effective pull policy of [always] for container sha256:cecac83e3d31d3950706ef3a5751acaa17658e142f1c3183cbec7b9dc400d7dc
2026-02-26T04:21:54.886692Z 01O Running on runner-g2po1apsn-project-3622566-concurrent-0 via runner-g2po1apsn-s-l-m-amd64-1772079409-a321a87d...
2026-02-26T04:21:55.060802Z 00O section_end:1772079715:prepare_script
2026-02-26T04:21:55.060809Z 00O+section_start:1772079715:get_sources
2026-02-26T04:21:55.061325Z 00O+Getting source from Git repository
2026-02-26T04:21:55.446629Z 01O Gitaly correlation ID: 5e043075fc5d4fcc9f42b476f629bc7c
2026-02-26T04:21:55.453636Z 01O Fetching changes...
2026-02-26T04:21:55.456959Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-02-26T04:21:55.459113Z 01O Created fresh repository.
2026-02-26T04:22:01.199867Z 01O Checking out 67e78404 as detached HEAD (ref is master)...
2026-02-26T04:22:01.389453Z 01O 
2026-02-26T04:22:01.389457Z 01O Skipping Git submodules setup
2026-02-26T04:22:01.389458Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-02-26T04:22:01.620806Z 00O section_end:1772079721:get_sources
2026-02-26T04:22:01.620811Z 00O+section_start:1772079721:download_artifacts
2026-02-26T04:22:01.621568Z 00O+Downloading artifacts
2026-02-26T04:22:02.038484Z 01O Downloading artifacts for mirror-packages (13270516135)...
2026-02-26T04:22:03.075234Z 01E Downloading artifacts from coordinator... ok        correlation_id=007cf86a9ca84d2c954a9c410d6e98d0 host=storage.googleapis.com id=13270516135 responseStatus=200 OK token=6c_uiz4xa
2026-02-26T04:22:03.324960Z 01O Downloading artifacts for build (13270516140)...
2026-02-26T04:22:03.723124Z 01E Downloading artifacts from coordinator... ok        correlation_id=136d608a96cc476a92bd37bccf5e0649 host=storage.googleapis.com id=13270516140 responseStatus=200 OK token=6c_uiz4xa
2026-02-26T04:22:04.437773Z 00O section_end:1772079724:download_artifacts
2026-02-26T04:22:04.437778Z 00O+section_start:1772079724:step_script
2026-02-26T04:22:04.438201Z 00O+Executing "step_script" stage of the job script
2026-02-26T04:22:04.438221Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-02-26T04:22:04.439287Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-02-26T04:22:04.798639Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-02-26T04:22:04.807624Z 01O $ mkdir -p ~/.R
2026-02-26T04:22:04.808753Z 01O $ echo 'CFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-02-26T04:22:04.808890Z 01O $ echo 'CXXFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-02-26T04:22:04.808892Z 01O $ R CMD check --no-manual --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
2026-02-26T04:22:04.981546Z 01O * using log directory '/builds/Rdatatable/data.table/data.table.Rcheck'
2026-02-26T04:22:04.981625Z 01O * using R version 4.5.0 (2025-04-11)
2026-02-26T04:22:04.981871Z 01O * using platform: x86_64-pc-linux-gnu
2026-02-26T04:22:04.982086Z 01O * R was compiled by
2026-02-26T04:22:04.982234Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-02-26T04:22:04.982235Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-02-26T04:22:04.982431Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-02-26T04:22:04.983104Z 01O * using session charset: ASCII
2026-02-26T04:22:05.763479Z 01O * using options '--no-manual --ignore-vignettes'
2026-02-26T04:22:05.763983Z 01O * checking for file 'data.table/DESCRIPTION' ... OK
2026-02-26T04:22:05.766761Z 01O * this is package 'data.table' version '1.18.99'
2026-02-26T04:22:05.766958Z 01O * package encoding: UTF-8
2026-02-26T04:22:05.767243Z 01O * checking package namespace information ... OK
2026-02-26T04:22:05.774235Z 01O * checking package dependencies ... INFO
2026-02-26T04:22:06.800651Z 01O Packages suggested but not available for checking:
2026-02-26T04:22:06.800654Z 01O   'bit64', 'R.utils', 'xts', 'zoo', 'yaml', 'litedown'
2026-02-26T04:22:06.800655Z 01O 
2026-02-26T04:22:06.800656Z 01O Packages which this enhances but not available for checking:
2026-02-26T04:22:06.800656Z 01O   'knitr', 'xfun'
2026-02-26T04:22:06.800871Z 01O * checking if this is a source package ... OK
2026-02-26T04:22:06.803687Z 01O * checking if there is a namespace ... OK
2026-02-26T04:22:06.807907Z 01O * checking for .dll and .exe files ... OK
2026-02-26T04:22:06.808357Z 01O * checking for hidden files and directories ... OK
2026-02-26T04:22:06.811451Z 01O * checking for portable file names ... OK
2026-02-26T04:22:06.815882Z 01O * checking for sufficient/correct file permissions ... OK
2026-02-26T04:22:06.817818Z 01O * checking whether package 'data.table' can be installed ... OK
2026-02-26T04:22:19.074429Z 01O * used C compiler: 'gcc (Debian 14.2.0-19) 14.2.0'
2026-02-26T04:22:19.074894Z 01O * checking installed package size ... INFO
2026-02-26T04:22:19.078990Z 01O   installed size is  7.5Mb
2026-02-26T04:22:19.079653Z 01O   sub-directories of 1Mb or more:
2026-02-26T04:22:19.080186Z 01O     doc     1.1Mb
2026-02-26T04:22:19.080187Z 01O     libs    1.2Mb
2026-02-26T04:22:19.080188Z 01O     po      1.7Mb
2026-02-26T04:22:19.080188Z 01O     tests   2.2Mb
2026-02-26T04:22:19.080428Z 01O * checking package directory ... OK
2026-02-26T04:22:19.080892Z 01O * checking DESCRIPTION meta-information ... OK
2026-02-26T04:22:19.829571Z 01O * checking top-level files ... OK
2026-02-26T04:22:19.830376Z 01O * checking for left-over files ... OK
2026-02-26T04:22:19.832434Z 01O * checking index information ... OK
2026-02-26T04:22:19.890474Z 01O * checking package subdirectories ... OK
2026-02-26T04:22:20.011299Z 01O * checking code files for non-ASCII characters ... OK
2026-02-26T04:22:20.059939Z 01O * checking R files for syntax errors ... WARNING
2026-02-26T04:22:20.127770Z 01O Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
2026-02-26T04:22:20.127771Z 01O   OS reports request to set locale to "en_US.UTF-8" cannot be honored
2026-02-26T04:22:20.127939Z 01O * checking whether the package can be loaded ... OK
2026-02-26T04:22:20.315881Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-02-26T04:22:20.471729Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-02-26T04:22:20.632222Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-02-26T04:22:20.788679Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-02-26T04:22:20.994393Z 01O * checking loading without being on the library search path ... OK
2026-02-26T04:22:21.387429Z 01O * checking whether startup messages can be suppressed ... OK
2026-02-26T04:22:21.586318Z 01O * checking dependencies in R code ... OK
2026-02-26T04:22:22.291062Z 01O * checking S3 generic/method consistency ... OK
2026-02-26T04:22:22.623909Z 01O * checking replacement functions ... OK
2026-02-26T04:22:22.834464Z 01O * checking foreign function calls ... OK
2026-02-26T04:22:23.600588Z 01O * checking R code for possible problems ... OK
2026-02-26T04:22:34.250528Z 01O * checking Rd files ... OK
2026-02-26T04:22:34.844596Z 01O * checking Rd metadata ... OK
2026-02-26T04:22:34.885098Z 01O * checking Rd cross-references ... INFO
2026-02-26T04:22:38.671251Z 01O Packages unavailable to check Rd xrefs: 'bit64', 'yaml'
2026-02-26T04:22:38.671361Z 01O * checking for missing documentation entries ... OK
2026-02-26T04:22:38.891765Z 01O * checking for code/documentation mismatches ... OK
2026-02-26T04:22:39.853762Z 01O * checking Rd \usage sections ... OK
2026-02-26T04:22:40.757793Z 01O * checking Rd contents ... OK
2026-02-26T04:22:41.223040Z 01O * checking for unstated dependencies in examples ... OK
2026-02-26T04:22:41.704852Z 01O * checking line endings in shell scripts ... OK
2026-02-26T04:22:41.705519Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-02-26T04:22:41.723121Z 01O * checking line endings in Makefiles ... OK
2026-02-26T04:22:41.723644Z 01O * checking compilation flags in Makevars ... OK
2026-02-26T04:22:41.776857Z 01O * checking for GNU extensions in Makefiles ... OK
2026-02-26T04:22:41.777813Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-02-26T04:22:41.778912Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-02-26T04:22:41.784305Z 01O * checking compiled code ... NOTE
2026-02-26T04:22:41.851830Z 01O File 'data.table/libs/data_table.so':
2026-02-26T04:22:41.851832Z 01O   Found non-API calls to R: 'IS_GROWABLE', 'LEVELS', 'SETLENGTH',
2026-02-26T04:22:41.851833Z 01O     'SET_GROWABLE_BIT', 'SET_TRUELENGTH', 'TRUELENGTH', 'XTRUELENGTH'
2026-02-26T04:22:41.852475Z 01O 
2026-02-26T04:22:41.852476Z 01O Compiled code should not call non-API entry points in R.
2026-02-26T04:22:41.852476Z 01O 
2026-02-26T04:22:41.852477Z 01O See 'Writing portable packages' in the 'Writing R Extensions' manual,
2026-02-26T04:22:41.852478Z 01O and section 'Moving into C API compliance' for issues with the use of
2026-02-26T04:22:41.852478Z 01O non-API entry points.
2026-02-26T04:22:41.852807Z 01O * checking installed files from 'inst/doc' ... OK
2026-02-26T04:22:42.000812Z 01O * checking files in 'vignettes' ... SKIPPED
2026-02-26T04:22:42.001263Z 01O * checking examples ... OK
2026-02-26T04:22:45.458311Z 01O * checking for unstated dependencies in 'tests' ... OK
2026-02-26T04:22:45.523805Z 01O * checking tests ...
2026-02-26T04:22:45.663926Z 01E   Running 'S4.R'
2026-02-26T04:22:45.970911Z 01E   Running 'autoprint.R'
2026-02-26T04:22:46.217072Z 01E   Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
2026-02-26T04:22:46.223572Z 01E   Running 'froll.R'
2026-02-26T04:26:46.909309Z 01E   Running 'litedown.R'
2026-02-26T04:26:47.052681Z 01E   Running 'main.R'
2026-02-26T04:27:20.314290Z 01E   Running 'mergelist.R'
2026-02-26T04:27:21.867840Z 01E   Running 'nafill.R'
2026-02-26T04:27:22.271527Z 01E   Running 'optimize.R'
2026-02-26T04:27:23.455275Z 01E   Running 'other.R'
2026-02-26T04:27:23.657392Z 01E   Running 'programming.R'
2026-02-26T04:27:24.231336Z 01E   Running 'types.R'
2026-02-26T04:27:24.464478Z 01O  OK
2026-02-26T04:27:24.464939Z 01O * DONE
2026-02-26T04:27:24.465390Z 01E 
2026-02-26T04:27:24.465501Z 01O Status: 1 WARNING, 1 NOTE
2026-02-26T04:27:24.465720Z 01E See
2026-02-26T04:27:24.465721Z 01E   '/builds/Rdatatable/data.table/data.table.Rcheck/00check.log'
2026-02-26T04:27:24.465722Z 01E for details.
2026-02-26T04:27:24.465884Z 01E 
2026-02-26T04:27:24.657542Z 00O section_end:1772080044:step_script
2026-02-26T04:27:24.657549Z 00O+section_start:1772080044:after_script
2026-02-26T04:27:24.657926Z 00O+Running after_script
2026-02-26T04:27:24.991759Z 01O Running after script...
2026-02-26T04:27:24.991789Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-02-26T04:27:24.992687Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-02-26T04:27:24.992695Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-02-26T04:27:24.992849Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-02-26T04:27:24.992922Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-02-26T04:27:25.155576Z 00O section_end:1772080045:after_script
2026-02-26T04:27:25.155584Z 00O+section_start:1772080045:upload_artifacts_on_success
2026-02-26T04:27:25.156321Z 00O+Uploading artifacts for successful job
2026-02-26T04:27:25.545961Z 01O Uploading artifacts...
2026-02-26T04:27:25.602456Z 01E bus/test-lin-rel-vanilla: found 693 matching artifact files and directories 
2026-02-26T04:27:27.741888Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=d334f74377bf4fe1a23ad2b630b1f985 id=13270516149 responseStatus=201 Created token=6c_uiz4xa
2026-02-26T04:27:27.912266Z 00O section_end:1772080047:upload_artifacts_on_success
2026-02-26T04:27:27.912274Z 00O+section_start:1772080047:cleanup_file_variables
2026-02-26T04:27:27.912367Z 00O+Cleaning up project directory and file based variables
2026-02-26T04:27:28.385740Z 00O section_end:1772080048:cleanup_file_variables
2026-02-26T04:27:28.385748Z 00O+
2026-02-26T04:27:28.398180Z 00O Job succeeded