2026-08-28T04:21:51.688181Z 00O Running with gitlab-runner 19.3.0 (9cbf0074)
2026-08-28T04:21:51.688204Z 00O   on k8s.saas-linux-medium-amd64.runners-manager.gitlab.com/default j8vTLRhES, system ID: r_p1OuWSx5hwjv
2026-08-28T04:21:51.688211Z 00O   feature flags: FF_USE_FASTZIP:true, FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true
2026-08-28T04:21:51.688238Z 00O Resolving secrets
2026-08-28T04:21:51.688418Z 00O section_start:1787890911:prepare_executor

2026-08-28T04:21:51.688423Z 00O+Preparing the "docker+machine" executor
2026-08-28T04:21:51.861458Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-08-28T04:21:51.862310Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.3.0
2026-08-28T04:21:51.862323Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.3.0
2026-08-28T04:21:51.862935Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-08-28T04:21:51.862942Z 00O Pulling docker image registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.3.0 ...
2026-08-28T04:21:53.358497Z 00O Using docker image sha256:c346e671eac589538f0d90fe3835e994540bf7d2bb7e8d857e616c1f4b0e1620 for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.3.0 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:47b7976ad6aa1cf103ead2b453fdc67c13d16a2e3345d79f17f76b53bde50632 ...
2026-08-28T04:21:55.096201Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-08-28T04:21:55.096967Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-08-28T04:21:55.096977Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-08-28T04:22:01.184258Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-08-28T04:22:01.184360Z 00O section_end:1787890921:prepare_executor

2026-08-28T04:22:01.184470Z 00O+section_start:1787890921:prepare_script

2026-08-28T04:22:01.184477Z 00O+Preparing environment
2026-08-28T04:22:01.185770Z 00O Using effective pull policy of [always] for container sha256:c346e671eac589538f0d90fe3835e994540bf7d2bb7e8d857e616c1f4b0e1620
2026-08-28T04:22:05.130809Z 01O Running on runner-j8vtlrhes-project-3622566-concurrent-0 via runner-j8vtlrhes-s-l-m-amd64-1787890533-0959df8b...
2026-08-28T04:22:05.304818Z 00O section_end:1787890925:prepare_script

2026-08-28T04:22:05.305805Z 00O+section_start:1787890925:get_sources

2026-08-28T04:22:05.305814Z 00O+Getting source from Git repository
2026-08-28T04:22:05.699883Z 01O Gitaly correlation ID: 84b481da4eb84fcc981c470d28f81f35
2026-08-28T04:22:05.709054Z 01O Fetching changes...
2026-08-28T04:22:05.712727Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-08-28T04:22:05.715254Z 01O Created fresh repository.
2026-08-28T04:22:12.041384Z 01O Checking out e26cf1b6 as detached HEAD (ref is master)...
2026-08-28T04:22:12.233101Z 01O 
2026-08-28T04:22:12.233108Z 01O Skipping Git submodules setup
2026-08-28T04:22:12.233109Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-08-28T04:22:12.459418Z 00O section_end:1787890932:get_sources

2026-08-28T04:22:12.460266Z 00O+section_start:1787890932:download_artifacts

2026-08-28T04:22:12.460273Z 00O+Downloading artifacts
2026-08-28T04:22:12.888117Z 01O Downloading artifacts for build (16161768334)...
2026-08-28T04:22:13.078901Z 01E Direct download from storage.googleapis.com         correlation_id=6e45c482fe4348acbc8419560055553b id=16161768334 status=302 token=72_DqXPrL
2026-08-28T04:22:13.300114Z 01E Downloading artifacts from coordinator... ok        correlation_id=6e45c482fe4348acbc8419560055553b id=16161768334 status=302 token=72_DqXPrL
2026-08-28T04:22:13.314241Z 01O Downloading artifacts for mirror-packages (16161768333)...
2026-08-28T04:22:13.667878Z 01E Direct download from storage.googleapis.com         correlation_id=2cc96d6fe0d44726882e56111f90cea2 id=16161768333 status=302 token=72_DqXPrL
2026-08-28T04:22:14.312357Z 01E Downloading artifacts from coordinator... ok        correlation_id=2cc96d6fe0d44726882e56111f90cea2 id=16161768333 status=302 token=72_DqXPrL
2026-08-28T04:22:15.360165Z 00O section_end:1787890935:download_artifacts

2026-08-28T04:22:15.360624Z 00O+section_start:1787890935:step_script

2026-08-28T04:22:15.360633Z 00O+Executing "step_script" stage of the job script
2026-08-28T04:22:15.360647Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-08-28T04:22:15.365183Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-08-28T04:22:15.739261Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-08-28T04:22:15.748923Z 01O $ mkdir -p ~/.R
2026-08-28T04:22:15.750572Z 01O $ echo 'CFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-08-28T04:22:15.750757Z 01O $ echo 'CXXFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-08-28T04:22:15.750760Z 01O $ R CMD check --no-manual --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
2026-08-28T04:22:15.936424Z 01O * using log directory '/builds/Rdatatable/data.table/data.table.Rcheck'
2026-08-28T04:22:15.936540Z 01O * using R version 4.5.0 (2025-04-11)
2026-08-28T04:22:15.936820Z 01O * using platform: x86_64-pc-linux-gnu
2026-08-28T04:22:15.937007Z 01O * R was compiled by
2026-08-28T04:22:15.937063Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-08-28T04:22:15.937064Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-08-28T04:22:15.937369Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-08-28T04:22:15.938065Z 01O * using session charset: ASCII
2026-08-28T04:22:16.724769Z 01O * using options '--no-manual --ignore-vignettes'
2026-08-28T04:22:16.725095Z 01O * checking for file 'data.table/DESCRIPTION' ... OK
2026-08-28T04:22:16.727592Z 01O * this is package 'data.table' version '1.18.99'
2026-08-28T04:22:16.727808Z 01O * package encoding: UTF-8
2026-08-28T04:22:16.728087Z 01O * checking package namespace information ... OK
2026-08-28T04:22:16.735259Z 01O * checking package dependencies ... INFO
2026-08-28T04:22:17.913650Z 01O Packages suggested but not available for checking:
2026-08-28T04:22:17.913652Z 01O   'bit64', 'R.utils', 'xts', 'zoo', 'yaml', 'litedown'
2026-08-28T04:22:17.913653Z 01O 
2026-08-28T04:22:17.913654Z 01O Packages which this enhances but not available for checking:
2026-08-28T04:22:17.913655Z 01O   'knitr', 'xfun'
2026-08-28T04:22:17.913722Z 01O * checking if this is a source package ... OK
2026-08-28T04:22:17.916644Z 01O * checking if there is a namespace ... OK
2026-08-28T04:22:17.922353Z 01O * checking for .dll and .exe files ... OK
2026-08-28T04:22:17.922426Z 01O * checking for hidden files and directories ... OK
2026-08-28T04:22:17.925499Z 01O * checking for portable file names ... OK
2026-08-28T04:22:17.929936Z 01O * checking for sufficient/correct file permissions ... OK
2026-08-28T04:22:17.931898Z 01O * checking whether package 'data.table' can be installed ... OK
2026-08-28T04:22:32.195391Z 01O * used C compiler: 'gcc (Debian 14.2.0-19) 14.2.0'
2026-08-28T04:22:32.195400Z 01O * checking installed package size ... INFO
2026-08-28T04:22:32.198828Z 01O   installed size is  7.7Mb
2026-08-28T04:22:32.199486Z 01O   sub-directories of 1Mb or more:
2026-08-28T04:22:32.200100Z 01O     doc     1.1Mb
2026-08-28T04:22:32.200103Z 01O     libs    1.2Mb
2026-08-28T04:22:32.200104Z 01O     po      1.7Mb
2026-08-28T04:22:32.200104Z 01O     tests   2.2Mb
2026-08-28T04:22:32.200419Z 01O * checking package directory ... OK
2026-08-28T04:22:32.200617Z 01O * checking DESCRIPTION meta-information ... OK
2026-08-28T04:22:32.998616Z 01O * checking top-level files ... OK
2026-08-28T04:22:32.999269Z 01O * checking for left-over files ... OK
2026-08-28T04:22:33.001554Z 01O * checking index information ... OK
2026-08-28T04:22:33.065729Z 01O * checking package subdirectories ... OK
2026-08-28T04:22:33.198853Z 01O * checking code files for non-ASCII characters ... OK
2026-08-28T04:22:33.250793Z 01O * checking R files for syntax errors ... WARNING
2026-08-28T04:22:33.324469Z 01O Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
2026-08-28T04:22:33.324471Z 01O   OS reports request to set locale to "en_US.UTF-8" cannot be honored
2026-08-28T04:22:33.324785Z 01O * checking whether the package can be loaded ... OK
2026-08-28T04:22:33.516838Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-08-28T04:22:33.681633Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-08-28T04:22:33.843735Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-08-28T04:22:34.013967Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-08-28T04:22:34.220641Z 01O * checking loading without being on the library search path ... OK
2026-08-28T04:22:34.629529Z 01O * checking whether startup messages can be suppressed ... OK
2026-08-28T04:22:34.831880Z 01O * checking dependencies in R code ... OK
2026-08-28T04:22:35.574493Z 01O * checking S3 generic/method consistency ... OK
2026-08-28T04:22:35.932392Z 01O * checking replacement functions ... OK
2026-08-28T04:22:36.139549Z 01O * checking foreign function calls ... OK
2026-08-28T04:22:36.925837Z 01O * checking R code for possible problems ... OK
2026-08-28T04:22:48.226056Z 01O * checking Rd files ... OK
2026-08-28T04:22:48.843761Z 01O * checking Rd metadata ... OK
2026-08-28T04:22:48.887905Z 01O * checking Rd cross-references ... INFO
2026-08-28T04:22:52.188355Z 01O Packages unavailable to check Rd xrefs: 'bit64', 'yaml'
2026-08-28T04:22:52.188469Z 01O * checking for missing documentation entries ... OK
2026-08-28T04:22:52.424210Z 01O * checking for code/documentation mismatches ... OK
2026-08-28T04:22:53.444763Z 01O * checking Rd \usage sections ... OK
2026-08-28T04:22:54.374561Z 01O * checking Rd contents ... OK
2026-08-28T04:22:54.864302Z 01O * checking for unstated dependencies in examples ... OK
2026-08-28T04:22:55.348586Z 01O * checking line endings in shell scripts ... OK
2026-08-28T04:22:55.349102Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-08-28T04:22:55.367291Z 01O * checking line endings in Makefiles ... OK
2026-08-28T04:22:55.367812Z 01O * checking compilation flags in Makevars ... OK
2026-08-28T04:22:55.421922Z 01O * checking for GNU extensions in Makefiles ... OK
2026-08-28T04:22:55.422829Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-08-28T04:22:55.423999Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-08-28T04:22:55.429723Z 01O * checking compiled code ... NOTE
2026-08-28T04:22:55.503990Z 01O File 'data.table/libs/data.table.so':
2026-08-28T04:22:55.503991Z 01O   Found non-API calls to R: 'IS_GROWABLE', 'LEVELS', 'R_GetConnection',
2026-08-28T04:22:55.503993Z 01O     'R_ReadConnection', 'SETLENGTH', 'SET_GROWABLE_BIT',
2026-08-28T04:22:55.503994Z 01O     'SET_TRUELENGTH', 'TRUELENGTH', 'XTRUELENGTH'
2026-08-28T04:22:55.504532Z 01O 
2026-08-28T04:22:55.504534Z 01O Compiled code should not call non-API entry points in R.
2026-08-28T04:22:55.504536Z 01O 
2026-08-28T04:22:55.504537Z 01O See 'Writing portable packages' in the 'Writing R Extensions' manual,
2026-08-28T04:22:55.504537Z 01O and section 'Moving into C API compliance' for issues with the use of
2026-08-28T04:22:55.504538Z 01O non-API entry points.
2026-08-28T04:22:55.505002Z 01O * checking installed files from 'inst/doc' ... OK
2026-08-28T04:22:55.674732Z 01O * checking files in 'vignettes' ... SKIPPED
2026-08-28T04:22:55.675038Z 01O * checking examples ... OK
2026-08-28T04:22:59.205041Z 01O * checking for unstated dependencies in 'tests' ... OK
2026-08-28T04:22:59.273131Z 01O * checking tests ...
2026-08-28T04:22:59.419696Z 01E   Running 'S4.R'
2026-08-28T04:22:59.747600Z 01E   Running 'autoprint.R'
2026-08-28T04:22:59.992753Z 01E   Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
2026-08-28T04:22:59.999787Z 01E   Running 'froll.R'
2026-08-28T04:27:12.811018Z 01E   Running 'litedown.R'
2026-08-28T04:27:12.967510Z 01E   Running 'main.R'
2026-08-28T04:27:48.054585Z 01E   Running 'mergelist.R'
2026-08-28T04:27:49.646067Z 01E   Running 'nafill.R'
2026-08-28T04:27:50.069559Z 01E   Running 'optimize.R'
2026-08-28T04:27:51.398190Z 01E   Running 'other.R'
2026-08-28T04:27:51.614862Z 01E   Running 'programming.R'
2026-08-28T04:27:52.236587Z 01E   Running 'self.R'
2026-08-28T04:27:52.466519Z 01E   Running 'types.R'
2026-08-28T04:27:52.717738Z 01O  OK
2026-08-28T04:27:52.718025Z 01O * DONE
2026-08-28T04:27:52.718567Z 01E 
2026-08-28T04:27:52.718582Z 01O Status: 1 WARNING, 1 NOTE
2026-08-28T04:27:52.718871Z 01E See
2026-08-28T04:27:52.718878Z 01E   '/builds/Rdatatable/data.table/data.table.Rcheck/00check.log'
2026-08-28T04:27:52.718880Z 01E for details.
2026-08-28T04:27:52.718988Z 01E 
2026-08-28T04:27:52.910826Z 00O section_end:1787891272:step_script

2026-08-28T04:27:52.911195Z 00O+section_start:1787891272:after_script

2026-08-28T04:27:52.911202Z 00O+Running after_script
2026-08-28T04:27:53.265197Z 01O Running after script...
2026-08-28T04:27:53.265231Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-08-28T04:27:53.266082Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-08-28T04:27:53.266093Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-08-28T04:27:53.266343Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-08-28T04:27:53.266347Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-08-28T04:27:53.428916Z 00O section_end:1787891273:after_script

2026-08-28T04:27:53.430125Z 00O+section_start:1787891273:upload_artifacts_on_success

2026-08-28T04:27:53.430137Z 00O+Uploading artifacts for successful job
2026-08-28T04:27:53.845608Z 01O Uploading artifacts...
2026-08-28T04:27:53.908425Z 01E bus/test-lin-rel-vanilla: found 701 matching artifact files and directories 
2026-08-28T04:27:55.360023Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=c4d52ff87a0e4d2596755b1c10371334 id=16161768336 status=201 token=72_DqXPrL
2026-08-28T04:27:55.544654Z 00O section_end:1787891275:upload_artifacts_on_success

2026-08-28T04:27:55.545074Z 00O+section_start:1787891275:cleanup_file_variables

2026-08-28T04:27:55.545080Z 00O+Cleaning up project directory and file based variables
2026-08-28T04:27:56.098945Z 00O section_end:1787891276:cleanup_file_variables

2026-08-28T04:27:56.111116Z 00O Job succeeded