2026-05-29T04:21:18.543796Z 00O Running with gitlab-runner 19.0.0~pre.1138.ga0a1e0e8 (a0a1e0e8) 2026-05-29T04:21:18.543805Z 00O  on blue-5.saas-linux-medium-amd64.runners-manager.gitlab.com/default nEW2M-oDE, system ID: s_fe9b8d77dc4b 2026-05-29T04:21:18.543810Z 00O  feature flags: FF_USE_GIT_PROACTIVE_AUTH:true 2026-05-29T04:21:18.543828Z 00O Resolving secrets 2026-05-29T04:21:18.543952Z 00O section_start:1780028478:prepare_executor 2026-05-29T04:21:18.543953Z 00O+Preparing the "docker+machine" executor 2026-05-29T04:21:18.672948Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-data.table ... 2026-05-29T04:21:22.547278Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-data.table 2026-05-29T04:21:22.547834Z 00O Authenticating with credentials from job payload (GitLab Registry) 2026-05-29T04:21:22.547842Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-data.table ... 2026-05-29T04:21:32.876493Z 00O Using docker image sha256:e8c9342a86b9b495336ad2119f715a2055e8157dc4712be2cef8647d2aeea81e for registry.gitlab.com/rdatatable/dockerfiles/r-data.table with digest registry.gitlab.com/rdatatable/dockerfiles/r-data.table@sha256:52e97c94b43c2a027999ce7f1dcba88da56d3daf4283cbdc6a56408d74ce227b ... 2026-05-29T04:21:32.876563Z 00O section_end:1780028492:prepare_executor 2026-05-29T04:21:32.876565Z 00O+section_start:1780028492:prepare_script 2026-05-29T04:21:32.876630Z 00O+Preparing environment 2026-05-29T04:21:32.877502Z 00O Using effective pull policy of [always] for container sha256:1ca0dacdc759c88ff969f7bc92b7da46c1f272289c12f958eb27348e56806bfb 2026-05-29T04:21:42.074508Z 01O Running on runner-new2m-ode-project-3622566-concurrent-0 via runner-new2m-ode-s-l-m-amd64-1780028391-7468b980... 2026-05-29T04:21:42.214787Z 00O section_end:1780028502:prepare_script 2026-05-29T04:21:42.214791Z 00O+section_start:1780028502:get_sources 2026-05-29T04:21:42.215321Z 00O+Getting source from Git repository 2026-05-29T04:21:42.527192Z 01O Gitaly correlation ID: e86253f2715c48468614939cb9d4bee1 2026-05-29T04:21:42.532229Z 01O Fetching changes... 2026-05-29T04:21:42.534732Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/ 2026-05-29T04:21:42.536857Z 01O Created fresh repository. 2026-05-29T04:21:47.915375Z 01O Checking out 1b998b10 as detached HEAD (ref is master)... 2026-05-29T04:21:48.091961Z 01O 2026-05-29T04:21:48.091965Z 01O Skipping Git submodules setup 2026-05-29T04:21:48.091965Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping' 2026-05-29T04:21:48.277666Z 00O section_end:1780028508:get_sources 2026-05-29T04:21:48.277670Z 00O+section_start:1780028508:download_artifacts 2026-05-29T04:21:48.278348Z 00O+Downloading artifacts 2026-05-29T04:21:48.621550Z 01O Downloading artifacts for mirror-packages (14595616712)... 2026-05-29T04:21:48.799486Z 01E Direct download from storage.googleapis.com  correlation_id=f12d2e4cf7e7446eb94921634f9501d6 id=14595616712 status=302 token=6f_cg7qs4 2026-05-29T04:21:49.268261Z 01E Downloading artifacts from coordinator... ok  correlation_id=f12d2e4cf7e7446eb94921634f9501d6 id=14595616712 status=302 token=6f_cg7qs4 2026-05-29T04:21:49.838651Z 01O Downloading artifacts for build (14595616713)... 2026-05-29T04:21:50.009426Z 01E Direct download from storage.googleapis.com  correlation_id=a5822d508802432289054dc7a064fc88 id=14595616713 status=302 token=6f_cg7qs4 2026-05-29T04:21:50.184804Z 01E Downloading artifacts from coordinator... ok  correlation_id=a5822d508802432289054dc7a064fc88 id=14595616713 status=302 token=6f_cg7qs4 2026-05-29T04:21:50.843210Z 00O section_end:1780028510:download_artifacts 2026-05-29T04:21:50.843214Z 00O+section_start:1780028510:step_script 2026-05-29T04:21:50.843697Z 00O+Executing "step_script" stage of the job script 2026-05-29T04:21:50.843717Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-data.table 2026-05-29T04:21:50.844647Z 00O Using docker image sha256:e8c9342a86b9b495336ad2119f715a2055e8157dc4712be2cef8647d2aeea81e for registry.gitlab.com/rdatatable/dockerfiles/r-data.table with digest registry.gitlab.com/rdatatable/dockerfiles/r-data.table@sha256:52e97c94b43c2a027999ce7f1dcba88da56d3daf4283cbdc6a56408d74ce227b ... 2026-05-29T04:21:51.152088Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) . 2026-05-29T04:21:51.159270Z 01O $ mkdir -p ~/.R 2026-05-29T04:21:51.160351Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)' 2026-05-29T04:21:51.366219Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’, ‘evaluate’, ‘highr’ 2026-05-29T04:21:51.366222Z 01E 2026-05-29T04:22:50.877176Z 01O $ echo 'CFLAGS=-g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars 2026-05-29T04:22:50.877187Z 01O $ echo 'CXXFLAGS=-g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars 2026-05-29T04:22:50.877191Z 01O $ echo '_R_CHECK_COMPILATION_FLAGS_KNOWN_=-Wvla' >> ~/.Renviron 2026-05-29T04:22:50.877196Z 01O $ res1=0; R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command 2026-05-29T04:22:51.044577Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’ 2026-05-29T04:22:51.044613Z 01O * using R version 4.5.0 (2025-04-11) 2026-05-29T04:22:51.044777Z 01O * using platform: x86_64-pc-linux-gnu 2026-05-29T04:22:51.044927Z 01O * R was compiled by 2026-05-29T04:22:51.045042Z 01O gcc (Debian 14.2.0-19) 14.2.0 2026-05-29T04:22:51.045042Z 01O GNU Fortran (Debian 14.2.0-19) 14.2.0 2026-05-29T04:22:51.045178Z 01O * running under: Debian GNU/Linux 13 (trixie) 2026-05-29T04:22:51.045398Z 01O * using session charset: UTF-8 2026-05-29T04:22:51.701706Z 01O * using option ‘--as-cran’ 2026-05-29T04:22:51.701862Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK 2026-05-29T04:22:51.704335Z 01O * this is package ‘data.table’ version ‘1.18.99’ 2026-05-29T04:22:51.704524Z 01O * package encoding: UTF-8 2026-05-29T04:22:51.704662Z 01O * checking CRAN incoming feasibility ... [13s/420s] NOTE 2026-05-29T04:29:52.085508Z 01O Maintainer: ‘Tyson Barrett ’ 2026-05-29T04:29:52.085511Z 01O 2026-05-29T04:29:52.085512Z 01O Found the following (possibly) invalid URLs: 2026-05-29T04:29:52.085513Z 01O URL: https://bugs.r-project.org/show_bug.cgi?id=17909 2026-05-29T04:29:52.085513Z 01O From: NEWS.md 2026-05-29T04:29:52.085514Z 01O Status: 418 2026-05-29T04:29:52.085514Z 01O Message: (Unused) 2026-05-29T04:29:52.085514Z 01O URL: https://mac.r-project.org/openmp (moved to https://mac.r-project.org/openmp/) 2026-05-29T04:29:52.085515Z 01O From: NEWS.md 2026-05-29T04:29:52.085516Z 01O Status: 200 2026-05-29T04:29:52.085516Z 01O Message: OK 2026-05-29T04:29:52.085517Z 01O URL: https://medium.com/basecs/getting-to-the-root-of-sorting-with-radix-sort-f8e9240d4224 2026-05-29T04:29:52.085517Z 01O From: man/setorder.Rd 2026-05-29T04:29:52.085517Z 01O Status: 403 2026-05-29T04:29:52.085518Z 01O Message: Forbidden 2026-05-29T04:29:52.085518Z 01O URL: https://medium.datadriveninvestor.com/most-starred-and-forked-github-repos-for-r-in-data-science-fb87a54d2a6a 2026-05-29T04:29:52.085519Z 01O From: README.md 2026-05-29T04:29:52.085519Z 01O Status: 403 2026-05-29T04:29:52.085520Z 01O Message: Forbidden 2026-05-29T04:29:52.085520Z 01O 2026-05-29T04:29:52.085520Z 01O Size of tarball: 6021249 bytes 2026-05-29T04:29:52.085730Z 01O * checking package namespace information ... OK 2026-05-29T04:29:52.093231Z 01O * checking package dependencies ... OK 2026-05-29T04:29:53.147298Z 01O * checking if this is a source package ... OK 2026-05-29T04:29:53.149459Z 01O * checking if there is a namespace ... OK 2026-05-29T04:29:53.153121Z 01O * checking for .dll and .exe files ... OK 2026-05-29T04:29:53.153419Z 01O * checking for hidden files and directories ... OK 2026-05-29T04:29:53.155262Z 01O * checking for portable file names ... OK 2026-05-29T04:29:53.159044Z 01O * checking for sufficient/correct file permissions ... OK 2026-05-29T04:29:53.163058Z 01O * checking whether package ‘data.table’ can be installed ... [39s/20s] OK 2026-05-29T04:30:12.686137Z 01O * used C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’ 2026-05-29T04:30:12.686435Z 01O * checking installed package size ... INFO 2026-05-29T04:30:12.689650Z 01O installed size is 9.0Mb 2026-05-29T04:30:12.690265Z 01O sub-directories of 1Mb or more: 2026-05-29T04:30:12.690806Z 01O doc 1.1Mb 2026-05-29T04:30:12.690807Z 01O libs 2.7Mb 2026-05-29T04:30:12.690807Z 01O po 1.7Mb 2026-05-29T04:30:12.690808Z 01O tests 2.2Mb 2026-05-29T04:30:12.701291Z 01O * checking package directory ... OK 2026-05-29T04:30:12.701523Z 01O * checking for future file timestamps ... OK 2026-05-29T04:30:12.702058Z 01O * checking ‘build’ directory ... OK 2026-05-29T04:30:12.702821Z 01O * checking DESCRIPTION meta-information ... OK 2026-05-29T04:30:13.407603Z 01O * checking top-level files ... OK 2026-05-29T04:30:14.799608Z 01O * checking for left-over files ... OK 2026-05-29T04:30:14.801807Z 01O * checking index information ... OK 2026-05-29T04:30:14.956513Z 01O * checking package subdirectories ... OK 2026-05-29T04:30:15.404680Z 01O * checking code files for non-ASCII characters ... OK 2026-05-29T04:30:15.449361Z 01O * checking R files for syntax errors ... OK 2026-05-29T04:30:15.520917Z 01O * checking whether the package can be loaded ... OK 2026-05-29T04:30:15.707903Z 01O * checking whether the package can be loaded with stated dependencies ... OK 2026-05-29T04:30:15.855932Z 01O * checking whether the package can be unloaded cleanly ... OK 2026-05-29T04:30:16.005286Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK 2026-05-29T04:30:16.156962Z 01O * checking whether the namespace can be unloaded cleanly ... OK 2026-05-29T04:30:16.350039Z 01O * checking loading without being on the library search path ... OK 2026-05-29T04:30:16.733800Z 01O * checking whether startup messages can be suppressed ... OK 2026-05-29T04:30:16.916913Z 01O * checking use of S3 registration ... OK 2026-05-29T04:30:17.898520Z 01O * checking dependencies in R code ... OK 2026-05-29T04:30:18.684833Z 01O * checking S3 generic/method consistency ... OK 2026-05-29T04:30:19.009571Z 01O * checking replacement functions ... OK 2026-05-29T04:30:19.212939Z 01O * checking foreign function calls ... OK 2026-05-29T04:30:19.934371Z 01O * checking R code for possible problems ... [15s/15s] OK 2026-05-29T04:30:34.568877Z 01O * checking Rd files ... OK 2026-05-29T04:30:35.099140Z 01O * checking Rd metadata ... OK 2026-05-29T04:30:35.137440Z 01O * checking Rd line widths ... OK 2026-05-29T04:30:35.398590Z 01O * checking Rd cross-references ... OK 2026-05-29T04:30:35.868838Z 01O * checking for missing documentation entries ... OK 2026-05-29T04:30:36.085387Z 01O * checking for code/documentation mismatches ... OK 2026-05-29T04:30:36.996644Z 01O * checking Rd \usage sections ... OK 2026-05-29T04:30:37.868382Z 01O * checking Rd contents ... OK 2026-05-29T04:30:38.275755Z 01O * checking for unstated dependencies in examples ... OK 2026-05-29T04:30:38.689078Z 01O * checking line endings in shell scripts ... OK 2026-05-29T04:30:38.689407Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK 2026-05-29T04:30:38.704854Z 01O * checking line endings in Makefiles ... OK 2026-05-29T04:30:38.705208Z 01O * checking compilation flags in Makevars ... OK 2026-05-29T04:30:38.752550Z 01O * checking for GNU extensions in Makefiles ... OK 2026-05-29T04:30:38.753162Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK 2026-05-29T04:30:38.754257Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK 2026-05-29T04:30:38.756697Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK 2026-05-29T04:30:38.760996Z 01O * checking pragmas in C/C++ headers and code ... OK 2026-05-29T04:30:38.782991Z 01O * checking compilation flags used ... OK 2026-05-29T04:30:38.784494Z 01O * checking compiled code ... NOTE 2026-05-29T04:30:38.851442Z 01O File ‘data.table/libs/data_table.so’: 2026-05-29T04:30:38.851443Z 01O Found non-API calls to R: ‘IS_GROWABLE’, ‘LEVELS’, ‘R_GetConnection’, 2026-05-29T04:30:38.851444Z 01O ‘R_ReadConnection’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’, 2026-05-29T04:30:38.851445Z 01O ‘SET_TRUELENGTH’, ‘TRUELENGTH’, ‘XTRUELENGTH’ 2026-05-29T04:30:38.851947Z 01O 2026-05-29T04:30:38.851947Z 01O Compiled code should not call non-API entry points in R. 2026-05-29T04:30:38.851948Z 01O 2026-05-29T04:30:38.851948Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, 2026-05-29T04:30:38.851949Z 01O and section ‘Moving into C API compliance’ for issues with the use of 2026-05-29T04:30:38.851950Z 01O non-API entry points. 2026-05-29T04:30:38.853015Z 01O * checking installed files from ‘inst/doc’ ... OK 2026-05-29T04:30:39.039612Z 01O * checking files in ‘vignettes’ ... OK 2026-05-29T04:30:39.230268Z 01O * checking examples ... OK 2026-05-29T04:30:45.936303Z 01O * checking examples with --run-donttest ... OK 2026-05-29T04:30:55.287626Z 01O * checking for unstated dependencies in ‘tests’ ... OK 2026-05-29T04:30:55.348521Z 01O * checking tests ... 2026-05-29T04:30:55.487735Z 01E Running ‘autoprint.R’ 2026-05-29T04:30:55.714271Z 01E Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK 2026-05-29T04:30:55.720315Z 01E Running ‘froll.R’ [427s/411s] 2026-05-29T04:37:46.247762Z 01E Running ‘litedown.R’ 2026-05-29T04:37:46.531985Z 01E Running ‘main.R’ [44s/41s] 2026-05-29T04:38:27.226896Z 01E Running ‘mergelist.R’ 2026-05-29T04:38:28.679191Z 01E Running ‘nafill.R’ 2026-05-29T04:38:29.130996Z 01E Running ‘optimize.R’ 2026-05-29T04:38:30.377096Z 01E Running ‘other.R’ 2026-05-29T04:38:30.570524Z 01E Running ‘programming.R’ 2026-05-29T04:38:31.097594Z 01E Running ‘S4.R’ 2026-05-29T04:38:31.396050Z 01E Running ‘types.R’ 2026-05-29T04:38:31.623055Z 01O [476s/456s] OK 2026-05-29T04:38:31.719043Z 01O * checking for unstated dependencies in vignettes ... OK 2026-05-29T04:38:31.973434Z 01O * checking package vignettes ... OK 2026-05-29T04:38:32.624498Z 01O * checking re-building of vignette outputs ... [27s/28s] OK 2026-05-29T04:39:00.477155Z 01O * checking PDF version of manual ... OK 2026-05-29T04:39:05.945875Z 01O * checking HTML version of manual ... OK 2026-05-29T04:39:08.774313Z 01O * checking for non-standard things in the check directory ... OK 2026-05-29T04:39:08.774735Z 01O * checking for detritus in the temp directory ... OK 2026-05-29T04:39:08.775196Z 01O * DONE 2026-05-29T04:39:08.775648Z 01E 2026-05-29T04:39:08.775668Z 01O Status: 2 NOTEs 2026-05-29T04:39:08.775843Z 01E See 2026-05-29T04:39:08.775844Z 01E ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’ 2026-05-29T04:39:08.775845Z 01E for details. 2026-05-29T04:39:08.775904Z 01E 2026-05-29T04:39:08.795228Z 01O * installing *source* package ‘data.table’ ... 2026-05-29T04:39:08.795229Z 01O ** this is package ‘data.table’ version ‘1.18.99’ 2026-05-29T04:39:08.795230Z 01O ** using staged installation 2026-05-29T04:39:08.795230Z 01O gcc -std=gnu23 14.2.0 2026-05-29T04:39:08.795231Z 01O zlib 1.3.1 is available ok 2026-05-29T04:39:08.795231Z 01O * checking if OpenMP works with CFLAGS='' LIBS=''... yes 2026-05-29T04:39:08.795232Z 01O ** libs 2026-05-29T04:39:08.795232Z 01O using C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’ 2026-05-29T04:39:08.795233Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c assign.c -o assign.o 2026-05-29T04:39:08.795234Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c between.c -o between.o 2026-05-29T04:39:08.795235Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c bmerge.c -o bmerge.o 2026-05-29T04:39:08.795235Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c chmatch.c -o chmatch.o 2026-05-29T04:39:08.795236Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c cj.c -o cj.o 2026-05-29T04:39:08.795237Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c coalesce.c -o coalesce.o 2026-05-29T04:39:08.795238Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c dogroups.c -o dogroups.o 2026-05-29T04:39:08.795239Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fastmean.c -o fastmean.o 2026-05-29T04:39:08.795240Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fcast.c -o fcast.o 2026-05-29T04:39:08.795259Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fifelse.c -o fifelse.o 2026-05-29T04:39:08.795260Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fmelt.c -o fmelt.o 2026-05-29T04:39:08.795261Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c forder.c -o forder.o 2026-05-29T04:39:08.795262Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frank.c -o frank.o 2026-05-29T04:39:08.795262Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fread.c -o fread.o 2026-05-29T04:39:08.795263Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c freadR.c -o freadR.o 2026-05-29T04:39:08.795264Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c froll.c -o froll.o 2026-05-29T04:39:08.795265Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frollR.c -o frollR.o 2026-05-29T04:39:08.795266Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frolladaptive.c -o frolladaptive.o 2026-05-29T04:39:08.795267Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frollapply.c -o frollapply.o 2026-05-29T04:39:08.795268Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fsort.c -o fsort.o 2026-05-29T04:39:08.795269Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fwrite.c -o fwrite.o 2026-05-29T04:39:08.795269Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fwriteR.c -o fwriteR.o 2026-05-29T04:39:08.795270Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c gsumm.c -o gsumm.o 2026-05-29T04:39:08.795271Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c hash.c -o hash.o 2026-05-29T04:39:08.795272Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c idatetime.c -o idatetime.o 2026-05-29T04:39:08.795273Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c ijoin.c -o ijoin.o 2026-05-29T04:39:08.795277Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c init.c -o init.o 2026-05-29T04:39:08.795278Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c inrange.c -o inrange.o 2026-05-29T04:39:08.795279Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c mergelist.c -o mergelist.o 2026-05-29T04:39:08.795280Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c nafill.c -o nafill.o 2026-05-29T04:39:08.795281Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c negate.c -o negate.o 2026-05-29T04:39:08.795282Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c nqrecreateindices.c -o nqrecreateindices.o 2026-05-29T04:39:08.795282Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c openmp-utils.c -o openmp-utils.o 2026-05-29T04:39:08.795283Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c programming.c -o programming.o 2026-05-29T04:39:08.795284Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c quickselect.c -o quickselect.o 2026-05-29T04:39:08.795285Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c rbindlist.c -o rbindlist.o 2026-05-29T04:39:08.795286Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c reorder.c -o reorder.o 2026-05-29T04:39:08.795287Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c shellsort.c -o shellsort.o 2026-05-29T04:39:08.795288Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c shift.c -o shift.o 2026-05-29T04:39:08.795289Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c snprintf.c -o snprintf.o 2026-05-29T04:39:08.795289Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c subset.c -o subset.o 2026-05-29T04:39:08.795290Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c transpose.c -o transpose.o 2026-05-29T04:39:08.795294Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c types.c -o types.o 2026-05-29T04:39:08.795295Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c uniqlist.c -o uniqlist.o 2026-05-29T04:39:08.795296Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o 2026-05-29T04:39:08.795297Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c vecseq.c -o vecseq.o 2026-05-29T04:39:08.795298Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c wrappers.c -o wrappers.o 2026-05-29T04:39:08.795299Z 01O gcc -std=gnu23 -shared -L/usr/lib/R/lib -Wl,-z,relro -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o frollapply.o fsort.o fwrite.o fwriteR.o gsumm.o hash.o idatetime.o ijoin.o init.o inrange.o mergelist.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shellsort.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fvisibility=hidden -lz -L/usr/lib/R/lib -lR 2026-05-29T04:39:08.795301Z 01O PKG_CFLAGS = -fvisibility=hidden 2026-05-29T04:39:08.795301Z 01O PKG_LIBS = -fvisibility=hidden -lz 2026-05-29T04:39:08.795302Z 01O if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi 2026-05-29T04:39:08.795302Z 01O if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi 2026-05-29T04:39:08.795303Z 01O installing to /builds/Rdatatable/data.table/data.table.Rcheck/00LOCK-data.table/00new/data.table/libs 2026-05-29T04:39:08.795304Z 01O ** R 2026-05-29T04:39:08.795304Z 01O ** inst 2026-05-29T04:39:08.795304Z 01O ** byte-compile and prepare package for lazy loading 2026-05-29T04:39:08.795305Z 01O ** help 2026-05-29T04:39:08.795305Z 01O *** installing help indices 2026-05-29T04:39:08.795305Z 01O ** building package indices 2026-05-29T04:39:08.795306Z 01O ** installing vignettes 2026-05-29T04:39:08.795306Z 01O ** testing if installed package can be loaded from temporary location 2026-05-29T04:39:08.795307Z 01O ** checking absolute paths in shared objects and dynamic libraries 2026-05-29T04:39:08.795307Z 01O ** testing if installed package can be loaded from final location 2026-05-29T04:39:08.795308Z 01O ** testing if installed package keeps a record of temporary installation path 2026-05-29T04:39:08.795308Z 01O * DONE (data.table) 2026-05-29T04:39:09.090604Z 00O section_end:1780029549:step_script 2026-05-29T04:39:09.090609Z 00O+section_start:1780029549:after_script 2026-05-29T04:39:09.090987Z 00O+Running after_script 2026-05-29T04:39:09.393974Z 01O Running after script... 2026-05-29T04:39:09.393996Z 01O $ mkdir -p bus/$CI_JOB_NAME 2026-05-29T04:39:09.395034Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id 2026-05-29T04:39:09.395073Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status 2026-05-29T04:39:09.395074Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image 2026-05-29T04:39:09.395102Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/ 2026-05-29T04:39:09.535081Z 00O section_end:1780029549:after_script 2026-05-29T04:39:09.535101Z 00O+section_start:1780029549:upload_artifacts_on_success 2026-05-29T04:39:09.535743Z 00O+Uploading artifacts for successful job 2026-05-29T04:39:09.873146Z 01O Uploading artifacts... 2026-05-29T04:39:09.922457Z 01E bus/test-lin-rel: found 713 matching artifact files and directories 2026-05-29T04:39:12.236612Z 01E Uploading artifacts as "archive" to coordinator... 201 Created correlation_id=6a5c267602674cc4a7952246809971f0 id=14595616714 status=201 token=6f_cg7qs4 2026-05-29T04:39:12.396750Z 00O section_end:1780029552:upload_artifacts_on_success 2026-05-29T04:39:12.396757Z 00O+section_start:1780029552:cleanup_file_variables 2026-05-29T04:39:12.396864Z 00O+Cleaning up project directory and file based variables 2026-05-29T04:39:12.834186Z 00O section_end:1780029552:cleanup_file_variables 2026-05-29T04:39:12.834192Z 00O+ 2026-05-29T04:39:12.859704Z 00O Job succeeded