2025-12-26T04:21:31.251043Z 00O Running with gitlab-runner 18.7.0~pre.433.g3a5f2314 (3a5f2314) 2025-12-26T04:21:31.251057Z 00O  on blue-4.saas-linux-medium-amd64.runners-manager.gitlab.com/default DS1-6aDu5, system ID: s_eacbc5a4b586 2025-12-26T04:21:31.251075Z 00O Resolving secrets 2025-12-26T04:21:31.251180Z 00O section_start:1766722891:prepare_executor 2025-12-26T04:21:31.251181Z 00O+Preparing the "docker+machine" executor 2025-12-26T04:21:31.380599Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-data.table ... 2025-12-26T04:21:35.590605Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-data.table 2025-12-26T04:21:35.591214Z 00O Authenticating with credentials from job payload (GitLab Registry) 2025-12-26T04:21:35.591224Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-data.table ... 2025-12-26T04:21:47.052143Z 00O Using docker image sha256:e8c9342a86b9b495336ad2119f715a2055e8157dc4712be2cef8647d2aeea81e for registry.gitlab.com/rdatatable/dockerfiles/r-data.table with digest registry.gitlab.com/rdatatable/dockerfiles/r-data.table@sha256:52e97c94b43c2a027999ce7f1dcba88da56d3daf4283cbdc6a56408d74ce227b ... 2025-12-26T04:21:47.052212Z 00O section_end:1766722907:prepare_executor 2025-12-26T04:21:47.052213Z 00O+section_start:1766722907:prepare_script 2025-12-26T04:21:47.052284Z 00O+Preparing environment 2025-12-26T04:21:47.053045Z 00O Using effective pull policy of [always] for container sha256:4ec9630efaddf5628ae3b6887772c831a61383c2c8145ad9cbfbef399a178335 2025-12-26T04:21:58.181025Z 01O Running on runner-ds1-6adu5-project-3622566-concurrent-0 via runner-ds1-6adu5-s-l-m-amd64-1766722757-74652cd6... 2025-12-26T04:21:58.337566Z 00O section_end:1766722918:prepare_script 2025-12-26T04:21:58.337574Z 00O+section_start:1766722918:get_sources 2025-12-26T04:21:58.338043Z 00O+Getting source from Git repository 2025-12-26T04:21:58.696745Z 01O Gitaly correlation ID: 7843a0251f24403fb68d8d3614f74536 2025-12-26T04:21:58.702249Z 01O Fetching changes... 2025-12-26T04:21:58.705690Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/ 2025-12-26T04:21:58.708093Z 01O Created fresh repository. 2025-12-26T04:22:04.148519Z 01O Checking out a29c209b as detached HEAD (ref is master)... 2025-12-26T04:22:04.331635Z 01O 2025-12-26T04:22:04.331642Z 01O Skipping Git submodules setup 2025-12-26T04:22:04.331651Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping' 2025-12-26T04:22:04.562530Z 00O section_end:1766722924:get_sources 2025-12-26T04:22:04.562537Z 00O+section_start:1766722924:download_artifacts 2025-12-26T04:22:04.563208Z 00O+Downloading artifacts 2025-12-26T04:22:04.978173Z 01O Downloading artifacts for mirror-packages (12544376784)... 2025-12-26T04:22:05.948880Z 01E Downloading artifacts from coordinator... ok  correlation_id=e70bd8de764f4f1e9e2ed03f8b8e2550 host=storage.googleapis.com id=12544376784 responseStatus=200 OK token=6b_pyc31i 2025-12-26T04:22:06.167418Z 01O Downloading artifacts for build (12544376788)... 2025-12-26T04:22:06.509759Z 01E Downloading artifacts from coordinator... ok  correlation_id=d3a2aff197bd489f807456d0317b522b host=storage.googleapis.com id=12544376788 responseStatus=200 OK token=6b_pyc31i 2025-12-26T04:22:07.203973Z 00O section_end:1766722927:download_artifacts 2025-12-26T04:22:07.203981Z 00O+section_start:1766722927:step_script 2025-12-26T04:22:07.204366Z 00O+Executing "step_script" stage of the job script 2025-12-26T04:22:07.204389Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-data.table 2025-12-26T04:22:07.205561Z 00O Using docker image sha256:e8c9342a86b9b495336ad2119f715a2055e8157dc4712be2cef8647d2aeea81e for registry.gitlab.com/rdatatable/dockerfiles/r-data.table with digest registry.gitlab.com/rdatatable/dockerfiles/r-data.table@sha256:52e97c94b43c2a027999ce7f1dcba88da56d3daf4283cbdc6a56408d74ce227b ... 2025-12-26T04:22:07.565193Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) . 2025-12-26T04:22:07.574574Z 01O $ mkdir -p ~/.R 2025-12-26T04:22:07.576358Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)' 2025-12-26T04:22:07.787317Z 01E also installing the dependencies ‘commonmark’, ‘R.oo’, ‘R.methodsS3’, ‘evaluate’, ‘highr’, ‘xfun’, ‘litedown’ 2025-12-26T04:22:07.787321Z 01E 2025-12-26T04:23:12.540258Z 01O $ echo 'CFLAGS=-g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars 2025-12-26T04:23:12.540360Z 01O $ echo 'CXXFLAGS=-g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars 2025-12-26T04:23:12.540362Z 01O $ echo '_R_CHECK_COMPILATION_FLAGS_KNOWN_=-Wvla' >> ~/.Renviron 2025-12-26T04:23:12.540426Z 01O $ res1=0; R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command 2025-12-26T04:23:12.714151Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’ 2025-12-26T04:23:12.714269Z 01O * using R version 4.5.0 (2025-04-11) 2025-12-26T04:23:12.714470Z 01O * using platform: x86_64-pc-linux-gnu 2025-12-26T04:23:12.714655Z 01O * R was compiled by 2025-12-26T04:23:12.714817Z 01O gcc (Debian 14.2.0-19) 14.2.0 2025-12-26T04:23:12.714818Z 01O GNU Fortran (Debian 14.2.0-19) 14.2.0 2025-12-26T04:23:12.715034Z 01O * running under: Debian GNU/Linux 13 (trixie) 2025-12-26T04:23:12.715242Z 01O * using session charset: UTF-8 2025-12-26T04:23:13.425474Z 01O * using option ‘--as-cran’ 2025-12-26T04:23:13.425703Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK 2025-12-26T04:23:13.428439Z 01O * this is package ‘data.table’ version ‘1.18.99’ 2025-12-26T04:23:13.428630Z 01O * package encoding: UTF-8 2025-12-26T04:23:13.428792Z 01O * checking CRAN incoming feasibility ... [12s/407s] NOTE 2025-12-26T04:29:59.973632Z 01O Maintainer: ‘Tyson Barrett ’ 2025-12-26T04:29:59.973634Z 01O 2025-12-26T04:29:59.973634Z 01O Days since last update: 2 2025-12-26T04:29:59.973635Z 01O 2025-12-26T04:29:59.973635Z 01O Found the following (possibly) invalid URLs: 2025-12-26T04:29:59.973636Z 01O URL: http://stereopsis.com/radix.html (moved to https://stereopsis.com/radix.html) 2025-12-26T04:29:59.973637Z 01O From: man/setkey.Rd 2025-12-26T04:29:59.973637Z 01O man/setorder.Rd 2025-12-26T04:29:59.973638Z 01O Status: 200 2025-12-26T04:29:59.973638Z 01O Message: OK 2025-12-26T04:29:59.973638Z 01O URL: https://medium.com/basecs/getting-to-the-root-of-sorting-with-radix-sort-f8e9240d4224 2025-12-26T04:29:59.973639Z 01O From: man/setorder.Rd 2025-12-26T04:29:59.973639Z 01O Status: 403 2025-12-26T04:29:59.973640Z 01O Message: Forbidden 2025-12-26T04:29:59.973640Z 01O URL: https://medium.datadriveninvestor.com/most-starred-and-forked-github-repos-for-r-in-data-science-fb87a54d2a6a 2025-12-26T04:29:59.973641Z 01O From: README.md 2025-12-26T04:29:59.973641Z 01O Status: 403 2025-12-26T04:29:59.973642Z 01O Message: Forbidden 2025-12-26T04:29:59.973642Z 01O 2025-12-26T04:29:59.973643Z 01O Size of tarball: 5938319 bytes 2025-12-26T04:29:59.973967Z 01O * checking package namespace information ... OK 2025-12-26T04:29:59.981605Z 01O * checking package dependencies ... OK 2025-12-26T04:30:01.142976Z 01O * checking if this is a source package ... OK 2025-12-26T04:30:01.145898Z 01O * checking if there is a namespace ... OK 2025-12-26T04:30:01.150300Z 01O * checking for .dll and .exe files ... OK 2025-12-26T04:30:01.150868Z 01O * checking for hidden files and directories ... OK 2025-12-26T04:30:01.153950Z 01O * checking for portable file names ... OK 2025-12-26T04:30:01.158543Z 01O * checking for sufficient/correct file permissions ... OK 2025-12-26T04:30:01.163081Z 01O * checking serialization versions ... OK 2025-12-26T04:30:01.165062Z 01O * checking whether package ‘data.table’ can be installed ... [38s/19s] OK 2025-12-26T04:30:20.451545Z 01O * used C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’ 2025-12-26T04:30:20.451915Z 01O * checking installed package size ... INFO 2025-12-26T04:30:20.456094Z 01O installed size is 8.7Mb 2025-12-26T04:30:20.456715Z 01O sub-directories of 1Mb or more: 2025-12-26T04:30:20.457249Z 01O doc 1.0Mb 2025-12-26T04:30:20.457250Z 01O libs 2.5Mb 2025-12-26T04:30:20.457250Z 01O po 1.7Mb 2025-12-26T04:30:20.457251Z 01O tests 2.1Mb 2025-12-26T04:30:20.471904Z 01O * checking package directory ... OK 2025-12-26T04:30:20.472280Z 01O * checking for future file timestamps ... OK 2025-12-26T04:30:20.473044Z 01O * checking ‘build’ directory ... OK 2025-12-26T04:30:20.473799Z 01O * checking DESCRIPTION meta-information ... OK 2025-12-26T04:30:21.327246Z 01O * checking top-level files ... OK 2025-12-26T04:30:22.837780Z 01O * checking for left-over files ... OK 2025-12-26T04:30:22.841011Z 01O * checking index information ... OK 2025-12-26T04:30:23.173551Z 01O * checking package subdirectories ... OK 2025-12-26T04:30:23.937067Z 01O * checking code files for non-ASCII characters ... OK 2025-12-26T04:30:23.987990Z 01O * checking R files for syntax errors ... OK 2025-12-26T04:30:24.068226Z 01O * checking whether the package can be loaded ... OK 2025-12-26T04:30:24.257347Z 01O * checking whether the package can be loaded with stated dependencies ... OK 2025-12-26T04:30:24.408341Z 01O * checking whether the package can be unloaded cleanly ... OK 2025-12-26T04:30:24.562012Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK 2025-12-26T04:30:24.715898Z 01O * checking whether the namespace can be unloaded cleanly ... OK 2025-12-26T04:30:24.913877Z 01O * checking loading without being on the library search path ... OK 2025-12-26T04:30:25.314771Z 01O * checking whether startup messages can be suppressed ... OK 2025-12-26T04:30:25.513442Z 01O * checking use of S3 registration ... OK 2025-12-26T04:30:26.499927Z 01O * checking dependencies in R code ... OK 2025-12-26T04:30:27.325624Z 01O * checking S3 generic/method consistency ... OK 2025-12-26T04:30:27.660132Z 01O * checking replacement functions ... OK 2025-12-26T04:30:27.863778Z 01O * checking foreign function calls ... OK 2025-12-26T04:30:28.615740Z 01O * checking R code for possible problems ... [16s/16s] OK 2025-12-26T04:30:44.441972Z 01O * checking Rd files ... OK 2025-12-26T04:30:45.016730Z 01O * checking Rd metadata ... OK 2025-12-26T04:30:45.061242Z 01O * checking Rd line widths ... OK 2025-12-26T04:30:45.354719Z 01O * checking Rd cross-references ... OK 2025-12-26T04:30:45.873636Z 01O * checking for missing documentation entries ... OK 2025-12-26T04:30:46.101672Z 01O * checking for code/documentation mismatches ... OK 2025-12-26T04:30:47.096454Z 01O * checking Rd \usage sections ... OK 2025-12-26T04:30:47.980787Z 01O * checking Rd contents ... OK 2025-12-26T04:30:48.437256Z 01O * checking for unstated dependencies in examples ... OK 2025-12-26T04:30:48.921201Z 01O * checking line endings in shell scripts ... OK 2025-12-26T04:30:48.921755Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK 2025-12-26T04:30:48.940353Z 01O * checking line endings in Makefiles ... OK 2025-12-26T04:30:48.942625Z 01O * checking compilation flags in Makevars ... OK 2025-12-26T04:30:48.999513Z 01O * checking for GNU extensions in Makefiles ... OK 2025-12-26T04:30:49.000402Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK 2025-12-26T04:30:49.001664Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK 2025-12-26T04:30:49.005712Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK 2025-12-26T04:30:49.012138Z 01O * checking pragmas in C/C++ headers and code ... OK 2025-12-26T04:30:49.033448Z 01O * checking compilation flags used ... OK 2025-12-26T04:30:49.035118Z 01O * checking compiled code ... NOTE 2025-12-26T04:30:49.115801Z 01O File ‘data.table/libs/data_table.so’: 2025-12-26T04:30:49.115804Z 01O Found non-API calls to R: ‘IS_GROWABLE’, ‘LEVELS’, ‘SETLENGTH’, 2025-12-26T04:30:49.115805Z 01O ‘SET_GROWABLE_BIT’, ‘SET_TRUELENGTH’, ‘TRUELENGTH’, ‘XTRUELENGTH’ 2025-12-26T04:30:49.116471Z 01O 2025-12-26T04:30:49.116472Z 01O Compiled code should not call non-API entry points in R. 2025-12-26T04:30:49.116473Z 01O 2025-12-26T04:30:49.116474Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, 2025-12-26T04:30:49.116474Z 01O and section ‘Moving into C API compliance’ for issues with the use of 2025-12-26T04:30:49.116475Z 01O non-API entry points. 2025-12-26T04:30:49.117574Z 01O * checking installed files from ‘inst/doc’ ... OK 2025-12-26T04:30:49.488917Z 01O * checking files in ‘vignettes’ ... OK 2025-12-26T04:30:49.851997Z 01O * checking examples ... OK 2025-12-26T04:30:56.761414Z 01O * checking examples with --run-donttest ... OK 2025-12-26T04:31:06.238602Z 01O * checking for unstated dependencies in ‘tests’ ... OK 2025-12-26T04:31:06.305235Z 01O * checking tests ... 2025-12-26T04:31:06.448557Z 01E Running ‘autoprint.R’ 2025-12-26T04:31:06.684400Z 01E Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK 2025-12-26T04:31:06.691198Z 01E Running ‘froll.R’ [433s/414s] 2025-12-26T04:38:00.337014Z 01E Running ‘knitr.R’ 2025-12-26T04:38:00.641015Z 01E Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK 2025-12-26T04:38:00.646404Z 01E Running ‘main.R’ [45s/41s] 2025-12-26T04:38:41.223245Z 01E Running ‘mergelist.R’ 2025-12-26T04:38:42.774717Z 01E Running ‘nafill.R’ 2025-12-26T04:38:43.187898Z 01E Running ‘other.R’ 2025-12-26T04:38:43.398363Z 01E Running ‘programming.R’ 2025-12-26T04:38:43.986335Z 01E Running ‘S4.R’ 2025-12-26T04:38:44.297049Z 01E Running ‘types.R’ 2025-12-26T04:38:44.541235Z 01O [482s/458s] OK 2025-12-26T04:38:44.654976Z 01O * checking for unstated dependencies in vignettes ... OK 2025-12-26T04:38:45.077627Z 01O * checking package vignettes ... OK 2025-12-26T04:38:45.458961Z 01O * checking re-building of vignette outputs ... [23s/24s] OK 2025-12-26T04:39:09.401732Z 01O * checking PDF version of manual ... OK 2025-12-26T04:39:15.205057Z 01O * checking HTML version of manual ... OK 2025-12-26T04:39:18.375456Z 01O * checking for non-standard things in the check directory ... OK 2025-12-26T04:39:18.375961Z 01O * checking for detritus in the temp directory ... OK 2025-12-26T04:39:18.376697Z 01O * DONE 2025-12-26T04:39:18.377128Z 01E 2025-12-26T04:39:18.377219Z 01O Status: 2 NOTEs 2025-12-26T04:39:18.377397Z 01E See 2025-12-26T04:39:18.377398Z 01E ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’ 2025-12-26T04:39:18.377399Z 01E for details. 2025-12-26T04:39:18.377474Z 01E 2025-12-26T04:39:18.415159Z 01O * installing *source* package ‘data.table’ ... 2025-12-26T04:39:18.415163Z 01O ** this is package ‘data.table’ version ‘1.18.99’ 2025-12-26T04:39:18.415164Z 01O ** using staged installation 2025-12-26T04:39:18.415164Z 01O gcc -std=gnu23 14.2.0 2025-12-26T04:39:18.415165Z 01O zlib 1.3.1 is available ok 2025-12-26T04:39:18.415165Z 01O * checking if R installation supports OpenMP without any extra hints... yes 2025-12-26T04:39:18.415166Z 01O ** libs 2025-12-26T04:39:18.415166Z 01O using C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’ 2025-12-26T04:39:18.415167Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c assign.c -o assign.o 2025-12-26T04:39:18.415168Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c between.c -o between.o 2025-12-26T04:39:18.415169Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c bmerge.c -o bmerge.o 2025-12-26T04:39:18.415170Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c chmatch.c -o chmatch.o 2025-12-26T04:39:18.415171Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c cj.c -o cj.o 2025-12-26T04:39:18.415172Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c coalesce.c -o coalesce.o 2025-12-26T04:39:18.415173Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c dogroups.c -o dogroups.o 2025-12-26T04:39:18.415173Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fastmean.c -o fastmean.o 2025-12-26T04:39:18.415174Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fcast.c -o fcast.o 2025-12-26T04:39:18.415175Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fifelse.c -o fifelse.o 2025-12-26T04:39:18.415212Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fmelt.c -o fmelt.o 2025-12-26T04:39:18.415214Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c forder.c -o forder.o 2025-12-26T04:39:18.415215Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frank.c -o frank.o 2025-12-26T04:39:18.415216Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fread.c -o fread.o 2025-12-26T04:39:18.415217Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c freadR.c -o freadR.o 2025-12-26T04:39:18.415218Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c froll.c -o froll.o 2025-12-26T04:39:18.415219Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frollR.c -o frollR.o 2025-12-26T04:39:18.415219Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frolladaptive.c -o frolladaptive.o 2025-12-26T04:39:18.415220Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frollapply.c -o frollapply.o 2025-12-26T04:39:18.415221Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fsort.c -o fsort.o 2025-12-26T04:39:18.415222Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fwrite.c -o fwrite.o 2025-12-26T04:39:18.415223Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fwriteR.c -o fwriteR.o 2025-12-26T04:39:18.415224Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c gsumm.c -o gsumm.o 2025-12-26T04:39:18.415225Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c hash.c -o hash.o 2025-12-26T04:39:18.415226Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c idatetime.c -o idatetime.o 2025-12-26T04:39:18.415227Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c ijoin.c -o ijoin.o 2025-12-26T04:39:18.415228Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c init.c -o init.o 2025-12-26T04:39:18.415233Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c inrange.c -o inrange.o 2025-12-26T04:39:18.415233Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c mergelist.c -o mergelist.o 2025-12-26T04:39:18.415234Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c nafill.c -o nafill.o 2025-12-26T04:39:18.415235Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c negate.c -o negate.o 2025-12-26T04:39:18.415236Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c nqrecreateindices.c -o nqrecreateindices.o 2025-12-26T04:39:18.415237Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c openmp-utils.c -o openmp-utils.o 2025-12-26T04:39:18.415238Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c programming.c -o programming.o 2025-12-26T04:39:18.415239Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c quickselect.c -o quickselect.o 2025-12-26T04:39:18.415240Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c rbindlist.c -o rbindlist.o 2025-12-26T04:39:18.415241Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c reorder.c -o reorder.o 2025-12-26T04:39:18.415242Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c shellsort.c -o shellsort.o 2025-12-26T04:39:18.415243Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c shift.c -o shift.o 2025-12-26T04:39:18.415244Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c snprintf.c -o snprintf.o 2025-12-26T04:39:18.415245Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c subset.c -o subset.o 2025-12-26T04:39:18.415245Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c transpose.c -o transpose.o 2025-12-26T04:39:18.415246Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c types.c -o types.o 2025-12-26T04:39:18.415247Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c uniqlist.c -o uniqlist.o 2025-12-26T04:39:18.415251Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o 2025-12-26T04:39:18.415252Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c vecseq.c -o vecseq.o 2025-12-26T04:39:18.415253Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fopenmp -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c wrappers.c -o wrappers.o 2025-12-26T04:39:18.415254Z 01O gcc -std=gnu23 -shared -L/usr/lib/R/lib -Wl,-z,relro -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o frollapply.o fsort.o fwrite.o fwriteR.o gsumm.o hash.o idatetime.o ijoin.o init.o inrange.o mergelist.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shellsort.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -lz -L/usr/lib/R/lib -lR 2025-12-26T04:39:18.415256Z 01O PKG_CFLAGS = -fopenmp 2025-12-26T04:39:18.415257Z 01O PKG_LIBS = -fopenmp -lz 2025-12-26T04:39:18.415257Z 01O if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi 2025-12-26T04:39:18.415258Z 01O if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi 2025-12-26T04:39:18.415259Z 01O installing to /builds/Rdatatable/data.table/data.table.Rcheck/00LOCK-data.table/00new/data.table/libs 2025-12-26T04:39:18.415259Z 01O ** R 2025-12-26T04:39:18.415260Z 01O ** inst 2025-12-26T04:39:18.415260Z 01O ** byte-compile and prepare package for lazy loading 2025-12-26T04:39:18.415261Z 01O ** help 2025-12-26T04:39:18.415261Z 01O *** installing help indices 2025-12-26T04:39:18.415262Z 01O ** building package indices 2025-12-26T04:39:18.415262Z 01O ** installing vignettes 2025-12-26T04:39:18.415262Z 01O ** testing if installed package can be loaded from temporary location 2025-12-26T04:39:18.415263Z 01O ** checking absolute paths in shared objects and dynamic libraries 2025-12-26T04:39:18.415264Z 01O ** testing if installed package can be loaded from final location 2025-12-26T04:39:18.415264Z 01O ** testing if installed package keeps a record of temporary installation path 2025-12-26T04:39:18.415265Z 01O * DONE (data.table) 2025-12-26T04:39:18.740529Z 00O section_end:1766723958:step_script 2025-12-26T04:39:18.740537Z 00O+section_start:1766723958:after_script 2025-12-26T04:39:18.740884Z 00O+Running after_script 2025-12-26T04:39:19.092665Z 01O Running after script... 2025-12-26T04:39:19.092689Z 01O $ mkdir -p bus/$CI_JOB_NAME 2025-12-26T04:39:19.093748Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id 2025-12-26T04:39:19.093866Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status 2025-12-26T04:39:19.093867Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image 2025-12-26T04:39:19.093990Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/ 2025-12-26T04:39:19.264774Z 00O section_end:1766723959:after_script 2025-12-26T04:39:19.264779Z 00O+section_start:1766723959:upload_artifacts_on_success 2025-12-26T04:39:19.265454Z 00O+Uploading artifacts for successful job 2025-12-26T04:39:19.651629Z 01O Uploading artifacts... 2025-12-26T04:39:19.718757Z 01E bus/test-lin-rel: found 679 matching artifact files and directories 2025-12-26T04:39:22.288514Z 01E Uploading artifacts as "archive" to coordinator... 201 Created correlation_id=14a774ac45bf45c98fbdaaf5e2513d10 id=12544376792 responseStatus=201 Created token=6b_pyc31i 2025-12-26T04:39:22.463208Z 00O section_end:1766723962:upload_artifacts_on_success 2025-12-26T04:39:22.463240Z 00O+section_start:1766723962:cleanup_file_variables 2025-12-26T04:39:22.463328Z 00O+Cleaning up project directory and file based variables 2025-12-26T04:39:22.967450Z 00O section_end:1766723962:cleanup_file_variables 2025-12-26T04:39:22.967458Z 00O+ 2025-12-26T04:39:23.006296Z 00O Job succeeded